GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001674-TA|BGIBMGA001674-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (147 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   5.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 94   KLAMMKMNGSEPLNLKISIAHKLYPYHDTHRMNVRWAKIYV 134
            K  + KM G +P +     A   YP   T  ++  W K  V
Sbjct: 1264 KYQLPKMGGPQPYSACSENAFAAYPGDCTRYLHCLWGKYEV 1304


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 102 GSEPLNLKISIAHKLYPYHDTH 123
           G + L+    + H ++PYH  H
Sbjct: 35  GLQGLHHSPHLNHAMHPYHANH 56


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.131    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,765
Number of Sequences: 317
Number of extensions: 1198
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 147
length of database: 114,650
effective HSP length: 51
effective length of query: 96
effective length of database: 98,483
effective search space:  9454368
effective search space used:  9454368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)