Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001674-TA|BGIBMGA001674-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(147 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 44 1e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 4e-05
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 5e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 38 6e-04
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 38 8e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 37 0.001
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.002
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.003
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 34 0.008
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.010
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.013
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 33 0.013
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 32 0.031
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.041
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 32 0.041
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.072
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.17
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 29 0.38
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 0.38
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 28 0.51
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 28 0.51
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 0.67
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 1.5
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 1.5
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 2.7
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 2.7
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 3.6
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 4.7
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 4.7
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 4.7
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 6.2
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 6.2
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 6.2
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 24 8.2
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 44.0 bits (99), Expect = 1e-05
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 30 ADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN----PNKRFAIV 85
+DD A V K+YI N+P L ED + G +LS +L KN +K F
Sbjct: 297 SDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFC 356
Query: 86 QFETASEAKLAMMKMNGSEPLNLKI 110
+F+ S+A++A+ ++G + K+
Sbjct: 357 EFKNPSDAEVAISGLDGKDTYGNKL 381
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.9 bits (94), Expect = 4e-05
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP---NKRFAIVQFETASEAKLAMMKMN 101
+Y+ N+P S+ + F+ G V+ AR++ P +K F +VQFE ++A ++ K+N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 102 GSE--PLNLKISIAHKLYP 118
G L++S AH P
Sbjct: 342 GYRYGGRPLQLSYAHYATP 360
Score = 28.3 bits (60), Expect = 0.51
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 35 GEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETAS 91
G++ ++Y+ N+ + ++ + G VL+ + PN K AI+++ TA
Sbjct: 58 GQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAE 117
Query: 92 EAKLAMMKMNGSE 104
EA+ A+ ++ +
Sbjct: 118 EARTAIKTLSNQK 130
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 38.3 bits (85), Expect = 5e-04
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 37 QVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSAR---LSKNPNKRFAIVQFETASEA 93
Q+ +D T LY+ N P E I FS +G V+ R L N N+RF VQ EA
Sbjct: 661 QIHVD-TNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEA 719
Query: 94 KLAM 97
A+
Sbjct: 720 HNAL 723
Score = 33.9 bits (74), Expect = 0.010
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSK--NPNKRFAIVQFETASEAKLAMM--- 98
+LY+ NI ++E + F +G+V S R+ K N +K F V T +A+ A+
Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAG 817
Query: 99 KMNGSEPLNLKIS 111
K G+ LN+ +S
Sbjct: 818 KQLGNRVLNVVLS 830
Score = 25.8 bits (54), Expect = 2.7
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 47 IINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNK--RFAIVQFETASE---AKLAMMKMN 101
+ N+P +SE+ ++ F G ++ + ++ K + A ++F SE AK +K
Sbjct: 594 VTNLPSDISENELKIFFKDCGNIIRIFILEDNQKDVKVAQIEFSETSEVLAAKTRDLKSI 653
Query: 102 GSEPLNLKISIAHKLY 117
++++I + LY
Sbjct: 654 RGHEISVQIHVDTNLY 669
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 37.9 bits (84), Expect = 6e-04
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN----PNKRFAIVQFETASEAKLAMMKM 100
LY+ +P G E +R FS+ G VL R+S+N +K +A ++FE+ A + M
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 101 N 101
+
Sbjct: 167 H 167
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 37.5 bits (83), Expect = 8e-04
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
T + I N+ G S D + A G++L+ +++ + K A V+F T + A+ + K++G
Sbjct: 100 TNVVIENLAPGTSSDDVAATLLNFGEILNCQVNDSQGKVRASVRFSTLASAQQVVQKLDG 159
Query: 103 SEPLNLKIS 111
K+S
Sbjct: 160 VTADGFKLS 168
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 36.7 bits (81), Expect = 0.001
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSK---NPNKRFAIVQFETASEAKLAMMKM 100
+L + NI L+++ ++A F G + L + N +K F +Q+ A+ A+ KM
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 101 NGSE--PLNLKISIAHKLYPYHDTHRMNVRWAKIYVKSAMAQRIQ 143
NG + N+++ + + + T M R+ + + +Q Q
Sbjct: 401 NGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLARQERSQPSQ 445
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 36.3 bits (80), Expect = 0.002
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 18 DDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN 77
D NE T + +A E + L++ I + ED ++ FSK G V R+ +
Sbjct: 76 DPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMRE 135
Query: 78 P----NKRFAIVQFETASEAKLAMMKMNGSE 104
P ++ F + F T EA A+ +N E
Sbjct: 136 PVTKASRGFGFLSFSTVEEATSAIDNLNSQE 166
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 35.9 bits (79), Expect = 0.003
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
L++ N+P G+S + FS +G V S R+ +K A + F++ AK + ++NG
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLS--HKHSAFLNFDSVETAKHVLEELNG 644
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 34.3 bits (75), Expect = 0.008
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLA 96
LY+ N+P G S I A FS +G V + N AIV +E+ S A +A
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNS--AIVSYESLSSAIVA 51
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.9 bits (74), Expect = 0.010
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 21 NEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN--- 77
NE D ++ ++ Q D +YI N+ L+ED I FS+ G+ + L ++
Sbjct: 11 NEQELDKPFS--SSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKET 68
Query: 78 -PNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIAH 114
+K FA +++E LA+ M + L+ + + H
Sbjct: 69 GKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDH 106
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.5 bits (73), Expect = 0.013
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 21 NEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN- 79
N Y Q A N G+Q+ +++ N+ +ED + AF G + S RL +P
Sbjct: 345 NPQPYAQQRAG-NFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQS 403
Query: 80 ---KRFAIVQFETASEAKLAMMKMNG 102
K F V F AK ++MNG
Sbjct: 404 GRLKGFGYVTFSDIDSAK-KCVEMNG 428
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 33.5 bits (73), Expect = 0.013
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 22 EHTYDVQYADDNAGEQVQLDHTK----LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN 77
E +D + + VQ DH +Y+ N+ E +R AFSK
Sbjct: 577 EEEFDNKVLLEQVESNVQTDHNSPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIK 636
Query: 78 PNKRFAIVQFETASEAKLAMMKMNGS 103
N V+FE A AM KM G+
Sbjct: 637 GNSPMCFVEFEEVCHAAKAMEKMQGA 662
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 32.3 bits (70), Expect = 0.031
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 50 IPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGSEPLNLK 109
+ R L E + FSK +L A + + NKRF +V +T + KL + N ++ + L
Sbjct: 158 VRRKLLEKNYKREFSKAISLLQAYATISTNKRF-MVYHQTKNSGKLLQLSTNSNKDMKLN 216
Query: 110 I------SIAHKLYPYHD 121
I ++ L P++D
Sbjct: 217 IMNVFGTKVSSSLIPWND 234
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.9 bits (69), Expect = 0.041
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR---FAIVQFETASEAKLAMMK 99
TK+ I N+P ++ +++ +G++ S R+ K ++ FA +F TA EA AM
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRA 780
Query: 100 MNGSEPL 106
+ + L
Sbjct: 781 LKNTHLL 787
Score = 25.4 bits (53), Expect = 3.6
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 40 LDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR---------FAIVQFETA 90
LD +Y+ N+ ++ + F LSA + P+ + F V+F+
Sbjct: 616 LDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDK 675
Query: 91 SEAKLAMMKMNG--SEPLNLKISIAHK 115
+ A AM MNG + L+I ++H+
Sbjct: 676 ASAVAAMHAMNGFVLDGHKLEIKLSHQ 702
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 31.9 bits (69), Expect = 0.041
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP---NKRFAIVQFETASEAKLAMMKMN 101
++I N+ + + FS GK+LS +++ + K + V F++ A A+ +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 102 GSEPLNLKISIAH 114
G + K+ + H
Sbjct: 230 GMLLNDKKVYVGH 242
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.1 bits (67), Expect = 0.072
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL---SKNPNKRFAIVQFETASEAKLAMMKMN 101
+++ N+ ++E + AF G+++S L K ++ +A V+F+ +AK AM MN
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 102 GS 103
S
Sbjct: 68 YS 69
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.9 bits (64), Expect = 0.17
Identities = 17/93 (18%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKV----LSARLSKNPNKRFAIVQFETASEAKLAMMKM 100
+ + N+ R ++++ I F +G + + NK + +++ +A A+ KM
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 101 NGSEPLNLKISIAHKLYPYHDTHRMNVRWAKIY 133
N +E ++ ++ K +P+ H+ + + Y
Sbjct: 161 NNAELDGEELFVSIKRFPFESLHKNHKHYENSY 193
>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 28.7 bits (61), Expect = 0.38
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMM 98
++ + NI ++E I FS GKV + K+ + A +QFE S K A++
Sbjct: 4 QVIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGETQTAKIQFERPSATKTALL 58
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 28.7 bits (61), Expect = 0.38
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 25 YDVQYADDNAGEQVQ----LDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNK 80
Y +A ++ ++Q + T LYI N+P +E I F K K++S R+ ++ +
Sbjct: 362 YQCSFAKESFSARLQSLQDTESTNLYISNLPLHWNESDISTLF-KPSKIISNRVLRDSKE 420
Query: 81 RFAIVQFETASEAKLA 96
+ V F + K A
Sbjct: 421 QSRGVGFARMQDRKTA 436
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 28.3 bits (60), Expect = 0.51
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 40 LDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMK 99
+ T+L++ IP + + + F +G++L +L F V+ E A +A+ +
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNG----FGFVEVEDARDARDIVND 56
Query: 100 MNGSEPLNLKISI 112
G E + +I +
Sbjct: 57 FQGKEFMGSRIVV 69
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 0.51
Identities = 14/72 (19%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 42 HTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMN 101
++ +++ + + +SE+ ++ F G+++ ++ P K VQF A++A+ ++
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP--PGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 102 GSEPLNLKISIA 113
G N +I ++
Sbjct: 360 GYPLGNSRIRLS 371
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.9 bits (59), Expect = 0.67
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 42 HTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMN 101
+T +++ + LSE ++ F G++L+ ++ K VQ+ S A+ A+ M
Sbjct: 296 NTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF--GKGCGFVQYSEKSAAEKAINTMQ 353
Query: 102 GS 103
G+
Sbjct: 354 GA 355
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 1.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 16 MRDDFNEHT-YDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAF 63
+++ FNE YD+ +D+ V KLY+ N+P L + + F
Sbjct: 1117 LKEQFNEGVDYDLLSSDEEFDVHVIAGLLKLYLRNLPTNLLDTSMHKLF 1165
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 1.5
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGK-----VLSARLSKNPNKR----FAIVQFETASEAKL 95
+Y+ N+P + F G +LS + +K+ + + FA + FE A
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 96 AMMKMNGS--EPLNLKISIAHKLYPY 119
A+ +NGS + LK+ H + Y
Sbjct: 82 AIASLNGSSFQGNTLKVEYTHIVERY 107
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 47 IINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNK 80
I+N+P +S + FS HG +L ++++ N+
Sbjct: 274 ILNLPLKVSPVELYNEFSNHGHILGVAINQSINE 307
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 2.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 37 QVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLS 71
Q + + + +Y+ NI LS++ I FSK+G+V S
Sbjct: 11 QYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVES 45
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 2.7
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGSE 104
+++ N+P G++ED IR G + ++ N A V F + A A+ ++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN--IAFVHFLNIAAAIKAVQEL---- 261
Query: 105 PLNLKIS 111
PLN K S
Sbjct: 262 PLNPKWS 268
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRF 82
++I N+P E I AF K GK+ ++ N F
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAF 338
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 4.7
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNG 102
+Y+ N+P SE+ ++ FS N V+FE A A+ + G
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQG 485
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 4.7
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN----KRFAIVQFETASEAKLAMMKM 100
+Y+ NIP ++E+ + F + G V S +L +P K + ++ + A A+ +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 101 N 101
N
Sbjct: 67 N 67
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.0 bits (52), Expect = 4.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 88 ETASEAKLAMMKMNGSEPLNL 108
+T+SE + KMNGS PL L
Sbjct: 296 QTSSELTSSTEKMNGSHPLQL 316
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 24.6 bits (51), Expect = 6.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 43 TKLYIINIPRG-LSEDGIRAAFSKHGKVLSARLSKNPN 79
T++ ++ RG L + +RAA S V L KNPN
Sbjct: 346 TRIAVVGAGRGPLVDCALRAAISSSRTVDMIALEKNPN 383
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 6.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 21 NEHTYDVQYADDNAGEQVQLDH 42
N H+Y V Y D+ G ++ +D+
Sbjct: 678 NGHSYTVYYRDEVTGTRISIDN 699
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQF 87
L++ N+P+ S + ++ F + G+V S R+ + K +A V+F
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.6 bits (51), Expect = 6.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 14 DPMRDDFNEHTYDVQYADDNAGEQVQL--DHTKLYIINIP 51
DP D FN+ +V Y +N E + + + T+ Y I IP
Sbjct: 502 DPFADRFNKTESEVFYYFENYDEDIPILRNLTEFYNIAIP 541
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 8.2
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 30 ADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKV-LSARLSKNPNKRFAIVQFE 88
AD + +V L + +I N+ + DGIR KH + R+SK + F I ++
Sbjct: 201 ADVDTENEVVLSVLEKWIKNVVQEYDIDGIRFDAIKHAPIEFWLRMSKAAD-IFTIGEYF 259
Query: 89 TASEAKLAMMKMNG 102
T S A+ + +G
Sbjct: 260 TGSPAEACDYQNSG 273
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.131 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,414
Number of Sequences: 5004
Number of extensions: 24281
Number of successful extensions: 111
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 44
length of query: 147
length of database: 2,362,478
effective HSP length: 67
effective length of query: 80
effective length of database: 2,027,210
effective search space: 162176800
effective search space used: 162176800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)
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