GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001674-TA|BGIBMGA001674-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (147 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A...    24   2.3  
Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    23   3.1  
U89803-1|AAD03794.1|  250|Anopheles gambiae Tc1-like transposase...    22   9.5  
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    22   9.5  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         22   9.5  
AY176050-1|AAO19581.1|  522|Anopheles gambiae cytochrome P450 CY...    22   9.5  

>AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A2
           protein.
          Length = 496

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 33  NAGEQVQLDHTKLYIINIPRGLSEDGIRA 61
           N GEQ + DHT   II +   + +  IR+
Sbjct: 344 NFGEQFRQDHTFTLIIRLRHNVIKTAIRS 372


>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 99  KMNGSEPLNLKISIAHKLYPYHDTH 123
           ++N SE  NL+ +   +L  +HD H
Sbjct: 68  RINASERANLRDNFLFRLNHWHDDH 92


>U89803-1|AAD03794.1|  250|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 3   NHSRPQRRREWDPMRDDFNEHT 24
           +H+R    R W  M+D+ ++HT
Sbjct: 139 SHARKNLPRSWMFMQDNDSKHT 160


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 103 SEPLNLKISIAHKLYPYHDTHRMNVR 128
           +E   +K +I HKL+     +++++R
Sbjct: 376 NENFGIKCTICHKLFSQRQDYQLHMR 401


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 25   YDVQYADDNAGE 36
            +D+Q+AD N GE
Sbjct: 1810 FDLQHADSNGGE 1821


>AY176050-1|AAO19581.1|  522|Anopheles gambiae cytochrome P450
           CYP12F2 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 81  RFAIVQFETASEAKLAMMKMNGSEPLNLKISIAHKLYPYHDT 122
           RF +++ E   EAK  +  +     L  K+ +   L+ Y  T
Sbjct: 222 RFGVLKDEQTEEAKKILGLVRNIFELTYKLDVEMSLWKYIST 263


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.131    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,438
Number of Sequences: 2123
Number of extensions: 5009
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 147
length of database: 516,269
effective HSP length: 58
effective length of query: 89
effective length of database: 393,135
effective search space: 34989015
effective search space used: 34989015
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)