Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001674-TA|BGIBMGA001674-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(147 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 44 3e-05
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 44 3e-05
Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical pr... 44 4e-05
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 44 6e-05
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 43 8e-05
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 43 8e-05
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 43 8e-05
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 43 8e-05
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 41 3e-04
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 41 3e-04
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 41 3e-04
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 41 3e-04
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 41 3e-04
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 41 3e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 41 3e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 41 3e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 41 3e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 41 4e-04
Z32683-13|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 40 0.001
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 37 0.007
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 36 0.009
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.012
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 36 0.012
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 36 0.012
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 36 0.016
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 36 0.016
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 36 0.016
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 36 0.016
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 36 0.016
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 35 0.027
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 34 0.036
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 34 0.036
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 34 0.036
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 34 0.036
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 34 0.036
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 33 0.063
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 33 0.063
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 33 0.11
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 33 0.11
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 33 0.11
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 33 0.11
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 33 0.11
Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical pr... 32 0.14
Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical pr... 32 0.14
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 31 0.25
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 31 0.25
AL117204-23|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 31 0.33
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 31 0.44
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 31 0.44
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 31 0.44
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 31 0.44
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 31 0.44
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 31 0.44
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 30 0.58
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 30 0.58
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 30 0.58
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 29 1.0
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 1.0
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 1.0
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 1.0
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ... 29 1.3
AF045646-8|AAK29830.1| 541|Caenorhabditis elegans Udp-glucurono... 29 1.8
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 28 2.4
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 27 4.1
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr... 27 4.1
U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical pr... 27 4.1
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 27 5.4
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 27 5.4
AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical... 27 5.4
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 27 5.4
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 27 5.4
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 27 5.4
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 27 5.4
Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 27 7.2
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 26 9.5
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 44.4 bits (100), Expect = 3e-05
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 36 EQVQ-LDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETAS 91
E+VQ LY+ NI L++DG+R FS G + SA++ + N K F V FE
Sbjct: 335 ERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPE 394
Query: 92 EAKLAMMKMN----GSEPLNLKIS 111
EA A+ MN G++PL + ++
Sbjct: 395 EATAAVTDMNSKMIGAKPLYVALA 418
Score = 35.1 bits (77), Expect = 0.021
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP---NKRFAIVQFETASEAKLAMMKMN 101
++I N+ R + + FS G +LS +++ + +K + V FET A+ A+ K+N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 102 G 102
G
Sbjct: 207 G 207
Score = 29.5 bits (63), Expect = 1.0
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAIVQFETASEAKLAMMKM 100
LYI ++ +SE + FS G VLS R+ ++ R +A V F+ ++A+ A+ M
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 101 N 101
N
Sbjct: 119 N 119
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 44.4 bits (100), Expect = 3e-05
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 36 EQVQ-LDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETAS 91
E+VQ LY+ NI L++DG+R FS G + SA++ + N K F V FE
Sbjct: 335 ERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPE 394
Query: 92 EAKLAMMKMN----GSEPLNLKIS 111
EA A+ MN G++PL + ++
Sbjct: 395 EATAAVTDMNSKMIGAKPLYVALA 418
Score = 35.1 bits (77), Expect = 0.021
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP---NKRFAIVQFETASEAKLAMMKMN 101
++I N+ R + + FS G +LS +++ + +K + V FET A+ A+ K+N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 102 G 102
G
Sbjct: 207 G 207
Score = 29.5 bits (63), Expect = 1.0
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAIVQFETASEAKLAMMKM 100
LYI ++ +SE + FS G VLS R+ ++ R +A V F+ ++A+ A+ M
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 101 N 101
N
Sbjct: 119 N 119
>Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 270
Score = 44.0 bits (99), Expect = 4e-05
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKM 100
D+T +Y+ NI + ++ +R FS +G + R+ K +R+A V++E A A+M+M
Sbjct: 127 DNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFK--TQRYAFVRYEKKECATKAIMEM 184
Query: 101 NGSE 104
NG E
Sbjct: 185 NGKE 188
Score = 31.1 bits (67), Expect = 0.33
Identities = 15/66 (22%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN----PNKRFAIVQFETASEAKLA 96
+H +++ ++ + +S + +++ F+K G+V A++ ++ +K + V F A+ A
Sbjct: 25 EHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENA 84
Query: 97 MMKMNG 102
+ MNG
Sbjct: 85 IAGMNG 90
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 43.6 bits (98), Expect = 6e-05
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 32 DNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETAS 91
D Q D+T +Y+ NI L ED IR AF + G + R K +A V+FET
Sbjct: 245 DEIFNQAAADNTSVYVGNIAN-LGEDEIRRAFDRFGPINEVRTFKIQG--YAFVKFETKE 301
Query: 92 EAKLAMMKMNGSE 104
A A+++MN ++
Sbjct: 302 SAARAIVQMNNAD 314
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLS-KNPNKRFAIVQFETASEAKLAMMK 99
D L++ N+ ++++ + F++ G V+ A++ + N +A V+F ++A LA+
Sbjct: 38 DPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQS 97
Query: 100 MNGSEPLNLKISIAHKLYP 118
NG E L ++ + P
Sbjct: 98 HNGRELLEKEMHVTWAFEP 116
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 43.2 bits (97), Expect = 8e-05
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 FNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN 79
+NE +YD Y Q D+T +Y+ NI L+ED IR F+ G++ R+ K
Sbjct: 111 YNEKSYDEIY------NQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFK--M 161
Query: 80 KRFAIVQFETASEAKLAMMKMNGSE 104
+ +A V+F+ A A+++MN +
Sbjct: 162 QGYAFVKFDNKDAAAKAIVQMNNQD 186
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 43.2 bits (97), Expect = 8e-05
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 FNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN 79
+NE +YD Y Q D+T +Y+ NI L+ED IR F+ G++ R+ K
Sbjct: 121 YNEKSYDEIY------NQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFK--M 171
Query: 80 KRFAIVQFETASEAKLAMMKMNGSE 104
+ +A V+F+ A A+++MN +
Sbjct: 172 QGYAFVKFDNKDAAAKAIVQMNNQD 196
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 43.2 bits (97), Expect = 8e-05
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 FNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN 79
+NE +YD Y Q D+T +Y+ NI L+ED IR F+ G++ R+ K
Sbjct: 224 YNEKSYDEIY------NQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFK--M 274
Query: 80 KRFAIVQFETASEAKLAMMKMNGSE 104
+ +A V+F+ A A+++MN +
Sbjct: 275 QGYAFVKFDNKDAAAKAIVQMNNQD 299
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSAR-LSKNPNKRFAIVQFETASEAKLAMMKMN 101
LY+ N+ ++ED I F++ G V + + N +A V+F +A A+ MN
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMN 105
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 43.2 bits (97), Expect = 8e-05
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 FNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN 79
+NE +YD Y Q D+T +Y+ NI L+ED IR F+ G++ R+ K
Sbjct: 192 YNEKSYDEIY------NQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFK--M 242
Query: 80 KRFAIVQFETASEAKLAMMKMNGSE 104
+ +A V+F+ A A+++MN +
Sbjct: 243 QGYAFVKFDNKDAAAKAIVQMNNQD 267
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 55 SEDGIRAAFSKHGKVLSARLSK-NPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIA 113
S D R F +G+V+ + K N NK FA+VQF +A+ A+ N +P++ + +
Sbjct: 273 SPDHYRRRFESYGQVIDVDMVKSNDNKAFAVVQFTNIDDAQKALQDTNIPKPMSYQSRPS 332
Query: 114 HKLYPYH 120
H++ ++
Sbjct: 333 HRIIIFY 339
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 55 SEDGIRAAFSKHGKVLSARLSK-NPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIA 113
S D R F +G+V+ + K N NK FA+VQF +A+ A+ N +P++ + +
Sbjct: 288 SPDHYRRRFESYGQVIDVDMVKSNDNKAFAVVQFTNIDDAQKALQDTNIPKPMSYQSRPS 347
Query: 114 HKLYPYH 120
H++ ++
Sbjct: 348 HRIIIFY 354
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 55 SEDGIRAAFSKHGKVLSARLSK-NPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIA 113
S D R F +G+V+ + K N NK FA+VQF +A+ A+ N +P++ + +
Sbjct: 288 SPDHYRRRFESYGQVIDVDMVKSNDNKAFAVVQFTNIDDAQKALQDTNIPKPMSYQSRPS 347
Query: 114 HKLYPYH 120
H++ ++
Sbjct: 348 HRIIIFY 354
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 55 SEDGIRAAFSKHGKVLSARLSK-NPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIA 113
S D R F +G+V+ + K N NK FA+VQF +A+ A+ N +P++ + +
Sbjct: 273 SPDHYRRRFESYGQVIDVDMVKSNDNKAFAVVQFTNIDDAQKALQDTNIPKPMSYQSRPS 332
Query: 114 HKLYPYH 120
H++ ++
Sbjct: 333 HRIIIFY 339
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 55 SEDGIRAAFSKHGKVLSARLSK-NPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIA 113
S D R F +G+V+ + K N NK FA+VQF +A+ A+ N +P++ + +
Sbjct: 288 SPDHYRRRFESYGQVIDVDMVKSNDNKAFAVVQFTNIDDAQKALQDTNIPKPMSYQSRPS 347
Query: 114 HKLYPYH 120
H++ ++
Sbjct: 348 HRIIIFY 354
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 55 SEDGIRAAFSKHGKVLSARLSK-NPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIA 113
S D R F +G+V+ + K N NK FA+VQF +A+ A+ N +P++ + +
Sbjct: 288 SPDHYRRRFESYGQVIDVDMVKSNDNKAFAVVQFTNIDDAQKALQDTNIPKPMSYQSRPS 347
Query: 114 HKLYPYH 120
H++ ++
Sbjct: 348 HRIIIFY 354
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 41.1 bits (92), Expect = 3e-04
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKMN 101
LY+ N+ + +DG++ F +G + SA++ + N K F V FE EA A+ +MN
Sbjct: 259 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 318
Query: 102 G----SEPLNLKIS 111
S+PL + I+
Sbjct: 319 SKMVCSKPLYVAIA 332
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAIVQFETASEAKLAMMKM 100
LY+ ++ ++E + FS G VLS R+ ++ R +A V F+ ++A+ AM M
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 101 N 101
N
Sbjct: 94 N 94
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 41.1 bits (92), Expect = 3e-04
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKMN 101
LY+ N+ + +DG++ F +G + SA++ + N K F V FE EA A+ +MN
Sbjct: 256 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 315
Query: 102 G----SEPLNLKIS 111
S+PL + I+
Sbjct: 316 SKMVCSKPLYVAIA 329
Score = 34.3 bits (75), Expect = 0.036
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKMN 101
++I N+ + + I FS G +LS +++ + + K + V FET A+ A+ K+N
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 102 GSEPLNLKISIAHKLYPYHDTHRMNVRWAK----IYVKS 136
G K+ + K P +R AK +YVK+
Sbjct: 119 GMLLAGKKVFVG-KFQPRAQRNRELGETAKQFTNVYVKN 156
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 41.1 bits (92), Expect = 3e-04
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKMN 101
LY+ N+ + +DG++ F +G + SA++ + N K F V FE EA A+ +MN
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 378
Query: 102 G----SEPLNLKIS 111
S+PL + I+
Sbjct: 379 SKMVCSKPLYVAIA 392
Score = 34.3 bits (75), Expect = 0.036
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKMN 101
++I N+ + + I FS G +LS +++ + + K + V FET A+ A+ K+N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 102 GSEPLNLKISIAHKLYPYHDTHRMNVRWAK----IYVKS 136
G K+ + K P +R AK +YVK+
Sbjct: 182 GMLLAGKKVFVG-KFQPRAQRNRELGETAKQFTNVYVKN 219
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAIVQFETASEAKLAMMKM 100
LY+ ++ ++E + FS G VLS R+ ++ R +A V F+ ++A+ AM M
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 101 N 101
N
Sbjct: 94 N 94
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 40.7 bits (91), Expect = 4e-04
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKMN 101
LY+ N+ + +DG++ F +G + SA++ + N K F V FE EA A+ +MN
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN 378
Query: 102 G----SEPLNLKI 110
S+PL + I
Sbjct: 379 SKMVCSKPLYVAI 391
Score = 34.3 bits (75), Expect = 0.036
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKMN 101
++I N+ + + I FS G +LS +++ + + K + V FET A+ A+ K+N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 102 GSEPLNLKISIAHKLYPYHDTHRMNVRWAK----IYVKS 136
G K+ + K P +R AK +YVK+
Sbjct: 182 GMLLAGKKVFVG-KFQPRAQRNRELGETAKQFTNVYVKN 219
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAIVQFETASEAKLAMMKM 100
LY+ ++ ++E + FS G VLS R+ ++ R +A V F+ ++A+ AM M
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 101 N 101
N
Sbjct: 94 N 94
>Z32683-13|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 24 TYDVQYADDNA---GEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN- 79
TYDV + +A Q ++ +++ NI +ED + FS++GK+ + L+ +
Sbjct: 33 TYDVVDEESSATSGAPQRSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRT 92
Query: 80 ---KRFAIVQFETASEAKLAMMKMNGSEPLNLKISI 112
K +A+V++ET EA A+ + N ++ L + +
Sbjct: 93 GFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKV 128
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMKM 100
+++ NI +SED IR+ FSK G VLS ++ K + ++F A++A+ +
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 101 NGSE 104
NG E
Sbjct: 80 NGYE 83
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 37.9 bits (84), Expect = 0.003
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 39 QLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSAR-LSKNP---NKRFAIVQFETASEAK 94
Q+ + LY+ IP+ ++ + + F G+++++R LS N +K V+F+ EA
Sbjct: 124 QIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEAD 183
Query: 95 LAMMKMNGSEP 105
+A+ +NGS P
Sbjct: 184 VAIKTLNGSIP 194
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN---KRFAIVQFETASEAKLAMMKMN 101
L++ N+ + + FS+ G +++ ++ ++ K +A V +EA AM+ +N
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 102 GSEPLNLKISIAHK 115
G+ + + K
Sbjct: 436 GTNLAGKTLQVVFK 449
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 36 EQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQF---ETASE 92
+Q + D T LYI N+P +E + +K G V+S R+ + P+ + V F ++ +
Sbjct: 181 QQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEK 240
Query: 93 AKLAMMKMNG 102
++ + +NG
Sbjct: 241 CEVIISALNG 250
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSAR--LSKNPN--KRFAIVQFETASEAKLAMM 98
T LYI + ++D +R SK+G + S + + K N K + V FE+ A A+
Sbjct: 107 TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVD 166
Query: 99 KMN 101
+N
Sbjct: 167 GLN 169
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 36 EQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQF---ETASE 92
+Q + D T LYI N+P +E + +K G V+S R+ + P+ + V F ++ +
Sbjct: 155 QQQEQDPTNLYIANLPLDFTEQMLETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEK 214
Query: 93 AKLAMMKMNG 102
++ + +NG
Sbjct: 215 CEVIISALNG 224
Score = 33.1 bits (72), Expect = 0.083
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 4 HSRPQRR-REWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAA 62
H R Q R P + Y D + L T LYI + ++D +R
Sbjct: 41 HGRVQNHMRGSGPFGNSNGYGRYTAPRGDQQHHDSTPLSSTNLYIRGLMPNTNDDLLREM 100
Query: 63 FSKHGKVLSAR--LSKNPN--KRFAIVQFETASEAKLAMMKMN 101
SK+G + S + + K N K + V FE+ A A+ +N
Sbjct: 101 CSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLN 143
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 36.7 bits (81), Expect = 0.007
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARL---SKNPNKRFAIVQFETASEAKLAMMK 99
T+L + N+P +E +R F K+G++ A L + + FA V F A A+ K
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAK 62
Query: 100 MNGSEPLNLKISIAHKLYPYHDTHRMNVRWAKIYVKSAMAQR 141
N + N K + P+ D ++ W+K Y K + A +
Sbjct: 63 SNQTF-FNSKKLTVEECRPFGDANKPRA-WSK-YAKDSSAYK 101
Score = 33.5 bits (73), Expect = 0.063
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 14 DPMRDDFNEHTYDVQYAD---DNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVL 70
+P + EH ++ D + E++ L+ +L++ N+P ED ++ F K+G+V
Sbjct: 248 EPEHEVIEEHGASLESRDKEEETVREKI-LETGRLFLRNLPYATKEDDLQFLFKKYGEVS 306
Query: 71 SAR--LSKNPN--KRFAIVQFETASEAKLAMMKMNG 102
+ + K K FAIV+F A A ++G
Sbjct: 307 EVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDG 342
Score = 30.3 bits (65), Expect = 0.58
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 36 EQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR-----FAIVQFETA 90
++ Q + TKL + N+P S + F G V + R+ K P ++ F V F +A
Sbjct: 741 QKEQGECTKLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISA 800
Query: 91 SEAKLA 96
EA A
Sbjct: 801 DEAHRA 806
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 68 KVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS--EPLNLKISIAHK 115
K+ A +K + F VQF TA +AK A+ M G + +L++ I+H+
Sbjct: 677 KLNPAEPTKPLSMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKISHR 726
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 36.3 bits (80), Expect = 0.009
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETASEAKLA 96
D + N+P+ ++ED +R F K G+V+ ++++ K FA V FE+ +A A
Sbjct: 174 DENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARA 233
Query: 97 MMKMN 101
+ ++N
Sbjct: 234 IAELN 238
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 35.9 bits (79), Expect = 0.012
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 21 NEHTYDVQYADD--NAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN- 77
NE + YA D + Q D +YI + LSE + A FS++G+V++ L ++
Sbjct: 14 NERELSLGYAGDLKKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDK 73
Query: 78 ---PNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIAH 114
+K FA + ++ LA+ NG I + H
Sbjct: 74 DTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDH 113
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 35.9 bits (79), Expect = 0.012
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
K+Y+ N+P + E + F K+G++ + FA V+FE +A+ A+ +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 104 E 104
E
Sbjct: 70 E 70
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 35.9 bits (79), Expect = 0.012
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
K+Y+ N+P + E + F K+G++ + FA V+FE +A+ A+ +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 104 E 104
E
Sbjct: 70 E 70
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 35.5 bits (78), Expect = 0.016
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 34 AGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHG---KVLSARLSKNPNKRFAIVQFETA 90
A + ++D KL+I + + SED +RA F+ G +V R + +K A V+++
Sbjct: 115 ASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHG 174
Query: 91 SEAKLAMMKMNGSEPLNLKISIAHKLYPYHDTHRMNVRWAKIYVKSAM 138
+A +A+ ++GS+ + S Y + R N R ++ + M
Sbjct: 175 LDAHMAISALHGSQTMPGASSSLVVKYADTEKERQNRRMQQMAAQMGM 222
Score = 29.9 bits (64), Expect = 0.77
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 31 DDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN 77
D N D KL++ IPR L E +R F + GK+ + K+
Sbjct: 17 DSNGFPVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKD 63
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 35.5 bits (78), Expect = 0.016
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLA 96
D L+I ++P+ + + F+ G +LSA++ N +K F V +E A A A
Sbjct: 333 DGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA 392
Query: 97 MMKMNGSEPLNLKISIAHKL 116
+ MNG + + ++ + K+
Sbjct: 393 ISAMNGFQIGSKRLKVQLKV 412
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.5 bits (78), Expect = 0.016
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLA 96
D L+I ++P+ + + F+ G +LSA++ N +K F V +E A A A
Sbjct: 497 DGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA 556
Query: 97 MMKMNGSEPLNLKISIAHKL 116
+ MNG + + ++ + K+
Sbjct: 557 ISAMNGFQIGSKRLKVQLKV 576
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN 77
D K+++ IPR +E R F K+G V S + ++
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.5 bits (78), Expect = 0.016
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLA 96
D L+I ++P+ + + F+ G +LSA++ N +K F V +E A A A
Sbjct: 497 DGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA 556
Query: 97 MMKMNGSEPLNLKISIAHKL 116
+ MNG + + ++ + K+
Sbjct: 557 ISAMNGFQIGSKRLKVQLKV 576
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 41 DHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN 77
D K+++ IPR +E R F K+G V S + ++
Sbjct: 53 DAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 35.5 bits (78), Expect = 0.016
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 34 AGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHG---KVLSARLSKNPNKRFAIVQFETA 90
A + ++D KL+I + + SED +RA F+ G +V R + +K A V+++
Sbjct: 115 ASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHG 174
Query: 91 SEAKLAMMKMNGSEPLNLKISIAHKLYPYHDTHRMNVRWAKIYVKSAM 138
+A +A+ ++GS+ + S Y + R N R ++ + M
Sbjct: 175 LDAHMAISALHGSQTMPGASSSLVVKYADTEKERQNRRMQQMAAQMGM 222
Score = 29.9 bits (64), Expect = 0.77
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 31 DDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKN 77
D N D KL++ IPR L E +R F + GK+ + K+
Sbjct: 17 DSNGFPVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKD 63
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 34.7 bits (76), Expect = 0.027
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFAIVQFETASEAKLAMMK 99
++Y+ +IP + ED + F K GK+ RL +P ++ +A V + +A A
Sbjct: 201 EIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKT 260
Query: 100 MNGSE-----PLNLKISIAH 114
+G E PL + +SIA+
Sbjct: 261 YDGHEISTGKPLKVNVSIAN 280
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 34.3 bits (75), Expect = 0.036
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 20 FNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN 79
FN + D ++ +L++ N+P + E ++ FS HG + LS
Sbjct: 93 FNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS---G 149
Query: 80 KRFAIVQFETASEAKLAMMKMNG 102
K FA ++ +T + A+ A ++G
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDG 172
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 34.3 bits (75), Expect = 0.036
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 20 FNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN 79
FN + D ++ +L++ N+P + E ++ FS HG + LS
Sbjct: 93 FNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS---G 149
Query: 80 KRFAIVQFETASEAKLAMMKMNG 102
K FA ++ +T + A+ A ++G
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDG 172
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 34.3 bits (75), Expect = 0.036
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKV--LSARLSKNPNKRFAIVQFETASEA 93
L++ N+P + E IR F +HGKV + + N + +A V F+T +A
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQA 221
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 34.3 bits (75), Expect = 0.036
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKV--LSARLSKNPNKRFAIVQFETASEA 93
L++ N+P + E IR F +HGKV + + N + +A V F+T +A
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQA 221
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 34.3 bits (75), Expect = 0.036
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKV--LSARLSKNPNKRFAIVQFETASEA 93
L++ N+P + E IR F +HGKV + + N + +A V F+T +A
Sbjct: 148 LFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQA 198
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 33.5 bits (73), Expect = 0.063
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLS--KNPNKRFAIVQFETASEAKLAMMKMNG 102
+Y+ N + E+ + F + G V+ L ++ N +FA+V+FE A+ MNG
Sbjct: 15 IYVANFSEEVDEELLEELFIQAGPVVKVILRDVRDSNAKFALVEFEDELSVLFAIELMNG 74
Query: 103 SEPLNLKISI 112
N ++ +
Sbjct: 75 VRLFNQELQV 84
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 33.5 bits (73), Expect = 0.063
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 28 QYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP----NKRFA 83
+Y A EQ + D +Y+ N+ + I F+ GKV + K+ K FA
Sbjct: 31 KYMAPTAEEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFA 90
Query: 84 IVQFETASEAKLAMMKMNGSEPLNLKISIAHK 115
V+F+ +LA++ ++G+ N KI + K
Sbjct: 91 FVEFQKLESVQLALV-LSGTMFRNRKIMVTLK 121
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 32.7 bits (71), Expect = 0.11
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 74 LSKNPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIAHKLYPYH 120
+ N NK FA+VQF +A+ A+ N +P++ + +H++ ++
Sbjct: 2 VKSNDNKAFAVVQFTNIDDAQKALQDTNIPKPMSYQSRPSHRIIIFY 48
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 32.7 bits (71), Expect = 0.11
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 74 LSKNPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIAHKLYPYH 120
+ N NK FA+VQF +A+ A+ N +P++ + +H++ ++
Sbjct: 2 VKSNDNKAFAVVQFTNIDDAQKALQDTNIPKPMSYQSRPSHRIIIFY 48
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 36 EQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP--NKRFAIVQFETASEA 93
E ++Y+ NIP E + A F +G+VLS + N +K F V ++
Sbjct: 44 EPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESC 103
Query: 94 KLAMMKMNGS 103
+ A ++ S
Sbjct: 104 EKARAALHES 113
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 47 IINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGSE 104
++N + D I + GKVL + P A+V+FE+ AK A MNG++
Sbjct: 127 VLNAQYPIDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGAD 184
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 47 IINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGSE 104
++N + D I + GKVL + P A+V+FE+ AK A MNG++
Sbjct: 127 VLNAQYPIDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGAD 184
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 36 EQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNP--NKRFAIVQFETASEA 93
E ++Y+ NIP E + A F +G+VLS + N +K F V ++
Sbjct: 44 EPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESC 103
Query: 94 KLAMMKMNGS 103
+ A ++ S
Sbjct: 104 EKARAALHES 113
>Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical
protein D2089.4b protein.
Length = 453
Score = 32.3 bits (70), Expect = 0.14
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 2 SNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDH----TKLYIINIPRGLSED 57
S H+ Q +E P ++ + + G + L+ L++ NIP +SE+
Sbjct: 331 SKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHLSNIPTSVSEE 390
Query: 58 GIRAAFSKHGKVLSARLSKNPNKRFAIVQ---FETASEAKLAMMKMNGSEPLNLKISIA 113
++ F++ G + A + + A+ Q ETA +A +AM +E +L++S +
Sbjct: 391 KLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKLAENAHLRVSFS 449
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 47 IINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRF-AIVQFETASEAKLAMMKMNGSEP 105
I N+ +S D + F+++GKVL ++ N N F A+VQ A+ A+LA +
Sbjct: 74 IENMMFPVSLDVLYQLFTRYGKVLRI-ITFNKNNTFQALVQMSEANSAQLAKQGLENQNV 132
Query: 106 LN 107
N
Sbjct: 133 YN 134
>Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical
protein D2089.4a protein.
Length = 615
Score = 32.3 bits (70), Expect = 0.14
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 2 SNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDH----TKLYIINIPRGLSED 57
S H+ Q +E P ++ + + G + L+ L++ NIP +SE+
Sbjct: 493 SKHTNVQMPKEGQPDAGLTRDYAHSTLHRFKKPGSKNYLNIYPPCATLHLSNIPTSVSEE 552
Query: 58 GIRAAFSKHGKVLSARLSKNPNKRFAIVQ---FETASEAKLAMMKMNGSEPLNLKISIA 113
++ F++ G + A + + A+ Q ETA +A +AM +E +L++S +
Sbjct: 553 KLKEMFAEAGFAVKAFKFFPKDHKMALCQLEDIETAIDALIAMHNHKLAENAHLRVSFS 611
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 47 IINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRF-AIVQFETASEAKLAMMKMNGSEP 105
I N+ +S D + F+++GKVL ++ N N F A+VQ A+ A+LA +
Sbjct: 236 IENMMFPVSLDVLYQLFTRYGKVLRI-ITFNKNNTFQALVQMSEANSAQLAKQGLENQNV 294
Query: 106 LN 107
N
Sbjct: 295 YN 296
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 31.5 bits (68), Expect = 0.25
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARL--SKNPNKRFAIVQFETASEAKLAMMKMN 101
+L++ NIP + ++ F K G V + ++ +K F V E +A+ A +++
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELH 213
Query: 102 GSEPLNLKISI 112
GS KI +
Sbjct: 214 GSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 31.5 bits (68), Expect = 0.25
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARL--SKNPNKRFAIVQFETASEAKLAMMKMN 101
+L++ NIP + ++ F K G V + ++ +K F V E +A+ A +++
Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELH 213
Query: 102 GSEPLNLKISI 112
GS KI +
Sbjct: 214 GSMIEGRKIEV 224
>AL117204-23|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 31.1 bits (67), Expect = 0.33
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMKM 100
LY+ ++E + AAF G V++ + ++ F V+F+ A +A +A+ M
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 101 NGSEPLNLKISIAHKLYPYHDTHRMNVRWA 130
N SE I + P WA
Sbjct: 73 NESELFGKTIRVNFARPPKATERSQKPVWA 102
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 30.7 bits (66), Expect = 0.44
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMKM 100
+Y+ N P +E+ + FS G++ + R+ + FA ++F A+ A+ +M
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 101 NGSE--PLNLKISIAHK 115
NG+E L++++A+K
Sbjct: 67 NGAEFNGRPLRVNLANK 83
>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
protein D2005.5 protein.
Length = 1119
Score = 30.7 bits (66), Expect = 0.44
Identities = 20/99 (20%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 42 HTKLYIINIPRGLSEDGIRAAFS-KHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKM 100
+++ ++++ ++E A S K+ ++ ++++N K+ A + + +E A K
Sbjct: 873 NSRSVLLSVKSSINETETNALISEKYMRLCVKKITENGEKQLA-AEVKRVAELNAAERKR 931
Query: 101 NGSEPLNLKISIAHKLYPYHDTHRMNVRWAKIYVKSAMA 139
N E LNL++ +K+Y ++ IY+K +
Sbjct: 932 NLEEQLNLRLRHENKIYKLMCSNCSKEFCKSIYIKKVFS 970
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 30.7 bits (66), Expect = 0.44
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARL--SKNPNKRFAIVQFETASEAKLAMMKMN 101
+L++ NIP E + A F K G V+ + ++ +K F V + +A A + N
Sbjct: 101 RLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFN 160
Query: 102 GS 103
G+
Sbjct: 161 GT 162
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 30.7 bits (66), Expect = 0.44
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 27 VQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLS-ARLSKNP------- 78
VQ A G V +LY+ NIP G +E+ + F++ + A+ NP
Sbjct: 168 VQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQIN 227
Query: 79 -NKRFAIVQFETASEAKLAMMKMNGSEPL--NLKISIAHKLYPYHDTHRMNVR 128
+K FA ++F + E A M +G + LK+ P +T MN R
Sbjct: 228 LDKNFAFIEFRSIDET-TAGMAFDGINFMGQQLKVRRPRDYQPSQNTFDMNSR 279
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 30.7 bits (66), Expect = 0.44
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARL--SKNPNKRFAIVQFETASEAKLAMMKMN 101
+L++ NIP E + A F K G V+ + ++ +K F V + +A A + N
Sbjct: 101 RLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFN 160
Query: 102 GS 103
G+
Sbjct: 161 GT 162
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 30.7 bits (66), Expect = 0.44
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 27 VQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLS-ARLSKNP------- 78
VQ A G V +LY+ NIP G +E+ + F++ + A+ NP
Sbjct: 168 VQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQIN 227
Query: 79 -NKRFAIVQFETASEAKLAMMKMNGSEPL--NLKISIAHKLYPYHDTHRMNVR 128
+K FA ++F + E A M +G + LK+ P +T MN R
Sbjct: 228 LDKNFAFIEFRSIDET-TAGMAFDGINFMGQQLKVRRPRDYQPSQNTFDMNSR 279
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 30.7 bits (66), Expect = 0.44
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 27 VQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLS-ARLSKNP------- 78
VQ A G V +LY+ NIP G +E+ + F++ + A+ NP
Sbjct: 143 VQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQIN 202
Query: 79 -NKRFAIVQFETASEAKLAMMKMNGSEPL--NLKISIAHKLYPYHDTHRMNVR 128
+K FA ++F + E A M +G + LK+ P +T MN R
Sbjct: 203 LDKNFAFIEFRSIDET-TAGMAFDGINFMGQQLKVRRPRDYQPSQNTFDMNSR 254
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 30.7 bits (66), Expect = 0.44
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 27 VQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLS-ARLSKNP------- 78
VQ A G V +LY+ NIP G +E+ + F++ + A+ NP
Sbjct: 146 VQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQIN 205
Query: 79 -NKRFAIVQFETASEAKLAMMKMNGSEPL--NLKISIAHKLYPYHDTHRMNVR 128
+K FA ++F + E A M +G + LK+ P +T MN R
Sbjct: 206 LDKNFAFIEFRSIDET-TAGMAFDGINFMGQQLKVRRPRDYQPSQNTFDMNSR 257
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 30.3 bits (65), Expect = 0.58
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
K+Y+ +P + + F + G++ +++ P FA V+++ +A+ A+ ++GS
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRP-PGFAFVEYDDVRDAEDAVRALDGS 62
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 30.3 bits (65), Expect = 0.58
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
K+Y+ +P + + F + G++ +++ P FA V+++ +A+ A+ ++GS
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRP-PGFAFVEYDDVRDAEDAVRALDGS 62
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 30.3 bits (65), Expect = 0.58
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
K+Y+ +P + + F + G++ +++ P FA V+++ +A+ A+ ++GS
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRP-PGFAFVEYDDVRDAEDAVRALDGS 62
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR-FAIVQFETASEAKLAMMKMNG 102
LYI N+P ++ + + F K G V R+ R A V +E +AK A ++G
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSG 79
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAIVQFETASEAKLAMMK 99
++Y+ ++ LSE +++ F G+++ +L++ P R F ++F + A+
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 100 MN 101
MN
Sbjct: 268 MN 269
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAIVQFETASEAKLAMMK 99
++Y+ ++ LSE +++ F G+++ +L++ P R F ++F + A+
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 100 MN 101
MN
Sbjct: 268 MN 269
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKR----FAIVQFETASEAKLAMMK 99
++Y+ ++ LSE +++ F G+++ +L++ P R F ++F + A+
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 100 MN 101
MN
Sbjct: 268 MN 269
>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
protein Y59E9AL.4 protein.
Length = 1100
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSK 76
+Y+ N+P G SE+ + S +G V+ R+SK
Sbjct: 821 VYVDNLPEGCSEEKLLRLCSCYGTVVEVRISK 852
>AF045646-8|AAK29830.1| 541|Caenorhabditis elegans
Udp-glucuronosyltransferase protein52 protein.
Length = 541
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 35 GEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPN--KRFAIVQFETASE 92
G LD T+L NI +GL ++++ + K +S L + PN K+ + E AS
Sbjct: 418 GTTYMLDKTRLTTPNIVKGLEAVLYDSSYTLNAKRISKMLHERPNPPKKIFVEWIEFASR 477
Query: 93 AKLAMMKMN 101
L +N
Sbjct: 478 NPLLHRNLN 486
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARL----SKNPNKRFAIVQFETASEAKLAMMKM 100
+Y+ N P +ED + FS+ G V + R+ + FA V+F + A+ A+ +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 101 NG 102
NG
Sbjct: 66 NG 67
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 40 LDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFET 89
L + L+ NIP G + I+ FS+ + R N K FA +++E+
Sbjct: 140 LPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPN-TKDFAFIEYES 188
>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
protein ZK1193.2 protein.
Length = 1250
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 12 EWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRG 53
EWD + D N D QY + G+ V LD K +++ +G
Sbjct: 323 EWDTLNDKLNLTLQDTQYTNWMPGQPV-LDAKKSCVVDSNKG 363
>U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical
protein EEED8.10a protein.
Length = 738
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 34 AGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNK 80
A + D K+ + NI +++ +++ FS++GK+ S L + K
Sbjct: 103 AFQHTSRDDRKIVVSNISAKVTQSQLQSFFSQYGKITSCILPREEKK 149
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 20 FNEHTYDVQYADDNAGEQVQLDHTKLYIINIPRGLSEDGIRAAFSKHGKVLSARLS 75
FN + D ++ +L++ N+P + E ++ FS HG + LS
Sbjct: 93 FNGAAFTESQLMDEVPKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS 148
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 99 KMNGSEPLNLKISIAHKLYPYHDTHRMNVRWAKIYVKS 136
++ G P+N+K I PY+ T + VR+ KI KS
Sbjct: 372 ELEGRPPINVKFEI-----PYYTTSGLQVRYLKIIEKS 404
>AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical
protein T08B2.5g protein.
Length = 695
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSK-NPNKRFAIVQFETASEAKLAMMKMNGS 103
L I +P G++ I + + S + K + +KRFA +Q ++A EAK+ ++ +
Sbjct: 135 LLIRGLPDGINNSLIFDSLGALVCLSSISMIKLSESKRFAYLQMKSADEAKM-LLNLTYK 193
Query: 104 EPLNLK 109
P+ +K
Sbjct: 194 SPIRIK 199
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSK-NPNKRFAIVQFETASEAKLAMMKMNGS 103
L I +P G++ I + + S + K + +KRFA +Q ++A EAK+ ++ +
Sbjct: 278 LLIRGLPDGINNSLIFDSLGALVCLSSISMIKLSESKRFAYLQMKSADEAKM-LLNLTYK 336
Query: 104 EPLNLK 109
P+ +K
Sbjct: 337 SPIRIK 342
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSK-NPNKRFAIVQFETASEAKLAMMKMNGS 103
L I +P G++ I + + S + K + +KRFA +Q ++A EAK+ ++ +
Sbjct: 306 LLIRGLPDGINNSLIFDSLGALVCLSSISMIKLSESKRFAYLQMKSADEAKM-LLNLTYK 364
Query: 104 EPLNLK 109
P+ +K
Sbjct: 365 SPIRIK 370
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSK-NPNKRFAIVQFETASEAKLAMMKMNGS 103
L I +P G++ I + + S + K + +KRFA +Q ++A EAK+ ++ +
Sbjct: 364 LLIRGLPDGINNSLIFDSLGALVCLSSISMIKLSESKRFAYLQMKSADEAKM-LLNLTYK 422
Query: 104 EPLNLK 109
P+ +K
Sbjct: 423 SPIRIK 428
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 45 LYIINIPRGLSEDGIRAAFSKHGKVLSARLSK-NPNKRFAIVQFETASEAKLAMMKMNGS 103
L I +P G++ I + + S + K + +KRFA +Q ++A EAK+ ++ +
Sbjct: 365 LLIRGLPDGINNSLIFDSLGALVCLSSISMIKLSESKRFAYLQMKSADEAKM-LLNLTYK 423
Query: 104 EPLNLK 109
P+ +K
Sbjct: 424 SPIRIK 429
>Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical
protein ZC443.1 protein.
Length = 320
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 27 VQYADDNAGEQVQLDHTKLYIINIPRGLSEDG 58
V+ A N+ ++++LD+ LY+ +IP +DG
Sbjct: 92 VEEALRNSLKRLRLDYVDLYLAHIPASTKDDG 123
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
++YI + +SE I F +G++ L F V+F+ +A+ A+ +NG
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNG----FGFVEFDDKRDAEDAVHDLNGK 59
Query: 104 E 104
E
Sbjct: 60 E 60
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
++YI + +SE I F +G++ L F V+F+ +A+ A+ +NG
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNG----FGFVEFDDKRDAEDAVHDLNGK 59
Query: 104 E 104
E
Sbjct: 60 E 60
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 44 KLYIINIPRGLSEDGIRAAFSKHGKVLSARLSKNPNKRFAIVQFETASEAKLAMMKMNGS 103
++YI + +SE I F +G++ L F V+F+ +A+ A+ +NG
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNG----FGFVEFDDKRDAEDAVHDLNGK 59
Query: 104 E 104
E
Sbjct: 60 E 60
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 75 SKNPNKRFAIVQFETASEAKLAMMKMNGSEPLNLKISIAHKLYPY 119
+K R V F T + K+ + ++ +PL+ A +++PY
Sbjct: 357 TKEKKGRIVFVTFATKFDKKVVEITLDEEDPLSQLYKTAQEIFPY 401
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 43 TKLYIINIPRGLSEDGIRAAFSKHGKVLSARL 74
T +Y+ NIP ++ED + F G + + ++
Sbjct: 200 TNVYVSNIPHSVTEDDLLFTFGSFGPLAALKI 231
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.131 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,549,115
Number of Sequences: 27539
Number of extensions: 127966
Number of successful extensions: 467
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 115
length of query: 147
length of database: 12,573,161
effective HSP length: 75
effective length of query: 72
effective length of database: 10,507,736
effective search space: 756556992
effective search space used: 756556992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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