Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001674-TA|BGIBMGA001674-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(147 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 23 0.99
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 23 0.99
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 23 0.99
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 23 0.99
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 23 0.99
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 23 0.99
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 23 0.99
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 23 0.99
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 0.99
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 0.99
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 23 1.3
AY569719-1|AAS86672.1| 401|Apis mellifera complementary sex det... 20 9.3
AY569718-1|AAS86671.1| 401|Apis mellifera complementary sex det... 20 9.3
AY569715-1|AAS86668.1| 401|Apis mellifera complementary sex det... 20 9.3
AY569714-1|AAS86667.1| 401|Apis mellifera complementary sex det... 20 9.3
AY569713-1|AAS86666.1| 401|Apis mellifera complementary sex det... 20 9.3
AY569711-1|AAS86664.1| 401|Apis mellifera complementary sex det... 20 9.3
AY569702-1|AAS86655.1| 400|Apis mellifera complementary sex det... 20 9.3
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 20 9.3
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 0.99
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MSNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIP 51
+SN++ ++ +++N+H Y+ Y + N EQ+ + +Y N P
Sbjct: 82 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIP-VPVYCGNFP 131
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 0.99
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MSNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIP 51
+SN++ ++ +++N+H Y+ Y + N EQ+ + +Y N P
Sbjct: 82 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIP-VPVYCGNFP 131
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 0.99
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MSNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIP 51
+SN++ ++ +++N+H Y+ Y + N EQ+ + +Y N P
Sbjct: 82 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIP-VPVYCGNFP 131
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 0.99
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MSNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIP 51
+SN++ ++ +++N+H Y+ Y + N EQ+ + +Y N P
Sbjct: 82 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIP-VPVYCGNFP 131
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 0.99
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MSNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIP 51
+SN++ ++ +++N+H Y+ Y + N EQ+ + +Y N P
Sbjct: 82 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIP-VPVYCGNFP 131
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 0.99
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MSNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIP 51
+SN++ ++ +++N+H Y+ Y + N EQ+ + +Y N P
Sbjct: 82 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIP-VPVYCGNFP 131
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 0.99
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MSNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIP 51
+SN++ ++ +++N+H Y+ Y + N EQ+ + +Y N P
Sbjct: 82 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIP-VPVYCGNFP 131
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 0.99
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MSNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIP 51
+SN++ ++ +++N+H Y+ Y + N EQ+ + +Y N P
Sbjct: 82 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIP-VPVYCGNFP 131
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 0.99
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MSNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIP 51
+SN++ ++ +++N+H Y+ Y + N EQ+ + +Y N P
Sbjct: 315 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIP-VPVYCGNFP 364
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 0.99
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MSNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIP 51
+SN++ ++ +++N+H Y+ Y + N EQ+ + +Y N P
Sbjct: 315 ISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIP-VPVYCGNFP 364
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 1.3
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1 MSNHSRPQRRREWDPMRDDFNEHTYDVQYADDNAGEQVQLDHTKLYIINIP 51
+SN++ ++ +++N+H Y+ Y + N EQ+ + +Y N P
Sbjct: 82 ISNNNPLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIPIP-VPVYCGNFP 131
>AY569719-1|AAS86672.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 20.2 bits (40), Expect = 9.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 2 SNHSRPQRRREWDPMRDDFNEH 23
+ R +RRREW ++ EH
Sbjct: 31 TQEERLRRRREWMIQQEREREH 52
>AY569718-1|AAS86671.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 20.2 bits (40), Expect = 9.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 2 SNHSRPQRRREWDPMRDDFNEH 23
+ R +RRREW ++ EH
Sbjct: 31 TQEERLRRRREWMIQQEREREH 52
>AY569715-1|AAS86668.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 20.2 bits (40), Expect = 9.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 2 SNHSRPQRRREWDPMRDDFNEH 23
+ R +RRREW ++ EH
Sbjct: 31 TQEERLRRRREWMIQQEREREH 52
>AY569714-1|AAS86667.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 20.2 bits (40), Expect = 9.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 2 SNHSRPQRRREWDPMRDDFNEH 23
+ R +RRREW ++ EH
Sbjct: 31 TQEERLRRRREWMIQQEREREH 52
>AY569713-1|AAS86666.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 20.2 bits (40), Expect = 9.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 2 SNHSRPQRRREWDPMRDDFNEH 23
+ R +RRREW ++ EH
Sbjct: 31 TQEERLRRRREWMIQQEREREH 52
>AY569711-1|AAS86664.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 20.2 bits (40), Expect = 9.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 2 SNHSRPQRRREWDPMRDDFNEH 23
+ R +RRREW ++ EH
Sbjct: 31 TQEERLRRRREWMIQQEREREH 52
>AY569702-1|AAS86655.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 20.2 bits (40), Expect = 9.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 2 SNHSRPQRRREWDPMRDDFNEH 23
+ R +RRREW ++ EH
Sbjct: 31 TQEERLRRRREWMIQQEREREH 52
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 20.2 bits (40), Expect = 9.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 2 SNHSRPQRRREWDPMRDDFNEH 23
+ R +RRREW ++ EH
Sbjct: 31 TQEERLRRRREWMIQQEREREH 52
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.319 0.131 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,098
Number of Sequences: 429
Number of extensions: 1536
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 147
length of database: 140,377
effective HSP length: 52
effective length of query: 95
effective length of database: 118,069
effective search space: 11216555
effective search space used: 11216555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)
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