GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001673-TA|BGIBMGA001673-PA|undefined
         (172 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   5.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.5  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 145 SSSTGDNHAAFSSVSTH 161
           SSST  N++A+SS S H
Sbjct: 143 SSSTWCNYSAYSSASRH 159


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 59  KSKSSTVVPQQASIAASTGP 78
           K K  TVVP+   +  + GP
Sbjct: 152 KCKPKTVVPEVGGVEEAKGP 171


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 65  VVPQQASIAASTGPSQPTHRASWSYG 90
           V+P   + A+S G   P H +S+  G
Sbjct: 106 VLPGNYANASSVGSRNPIHTSSYMTG 131


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 65  VVPQQASIAASTGPSQPTHRASWSYG 90
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364



 Score = 21.0 bits (42), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 44   RINNLGYHNPRILEDKSKSSTVVPQQASIA 73
            +I +   +NP I   + KS   V Q+ SIA
Sbjct: 1400 QIGSTSSNNPSISAFRKKSLAYVQQRMSIA 1429


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 65  VVPQQASIAASTGPSQPTHRASWSYG 90
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364



 Score = 21.0 bits (42), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 44   RINNLGYHNPRILEDKSKSSTVVPQQASIA 73
            +I +   +NP I   + KS   V Q+ SIA
Sbjct: 1400 QIGSTSSNNPSISAFRKKSLAYVQQRMSIA 1429


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.126    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,008
Number of Sequences: 317
Number of extensions: 1639
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 172
length of database: 114,650
effective HSP length: 53
effective length of query: 119
effective length of database: 97,849
effective search space: 11644031
effective search space used: 11644031
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)