Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001673-TA|BGIBMGA001673-PA|undefined
(172 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.040
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 28 0.65
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual 28 0.65
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 28 0.65
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 27 1.5
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 27 2.0
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 4.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.1
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 8.1
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 25 8.1
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 32.3 bits (70), Expect = 0.040
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 93 LHCLITPLQFIAAHDRIINAWGHTSPAWQLCI-TW-TTHDTHATFKLSLDSPQTSSSTGD 150
++C F A +I++ G T+ QL + +W T H H +L +P+ STG
Sbjct: 229 INCQADARSFYAERSKIVHVAGLTNDVTQLELESWFTNHGVHPVALWTLKTPEPYKSTGT 288
Query: 151 NHAAFSS 157
F+S
Sbjct: 289 GFVLFAS 295
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 28.3 bits (60), Expect = 0.65
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 51 HNPRILEDKSKSSTVVPQQASIAASTGPSQPTHRAS 86
H P + EDK+ VP +A++ + G S+P AS
Sbjct: 65 HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100
>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 28.3 bits (60), Expect = 0.65
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 20 PNNSIRTVGLPSNITRSVEDLPSVRINNLGYHNPRILEDKSKSSTVVPQ 68
P N I+++GLPS I R + +++N ILED SK+ + + +
Sbjct: 157 PLNIIKSIGLPSQIKRKI----CLQLNESTLDFDAILEDASKAFSALSE 201
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 0.65
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 24 IRTVGLPSNITRSVEDLPSVRINNLG-YHNPRILEDKSKSSTVVP 67
IRT S R +EDLPS I+ G Y +E+ +++ +VP
Sbjct: 262 IRTYRTKSKTRRFIEDLPSRTISREGFYSEEEEIENSTQNGELVP 306
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 27.1 bits (57), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 43 VRINNLGYHNPRI-LEDKSKSSTVVPQQASIAASTGPSQPTHRASWS 88
+ +NN H+ + L SK + +VP +AA +G S P A +S
Sbjct: 446 IGVNNRNLHSFEVDLSTTSKLAEMVPDDVILAALSGISSPADVAHYS 492
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 26.6 bits (56), Expect = 2.0
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 3 ESRLRHFQDKAH--IYIQVPNNSIRTVG 28
ESRLR Q K ++ Q P+NSI+T+G
Sbjct: 139 ESRLRAEQHKRRFGVHSQQPSNSIQTIG 166
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 4.6
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 30 PSNITRSVEDLPSVRIN---NLGYHNPRILEDKSKSSTVVPQQASIAASTGPSQPTHRAS 86
PS T++ + SV ++ N P L + S+++V Q + G + T R
Sbjct: 539 PSAFTKAGNEALSVPLSGARNTAASRPTNLAAGNSSASIVQQLLECGGTMGQQKMTSRIR 598
Query: 87 WSYGTQLHCLITPLQFIAAHDR 108
+H L+ P+ HD+
Sbjct: 599 ELTERVMHSLMRPVPLDLPHDQ 620
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 6.1
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 110 INAWGHTSPAWQLCITWTTHDTHATFKL---SLDSPQTSSSTGDNHAAFSSVSTHC 162
+NA T ++ T T DT A+ + S S ++S+TG + + S ST C
Sbjct: 60 LNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSC 115
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 138 SLDSPQTSSSTGDNHAAFSSVSTHCKLRAALALAS 172
SL P+++S+ D H + +S S+H + + L + S
Sbjct: 287 SLQLPKSTSNPADLHLSIASASSHKNIFSGLDVFS 321
>SPCC285.08 |ret2||coatomer delta subunit Ret2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 8.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 23 SIRTVGLPSNITRSVEDLPSVRINNLGYHNPRILEDKSKSSTV 65
SI G + I+R ++ VR+ +L P ++ +KS+++TV
Sbjct: 7 SIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTTV 49
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.126 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,744
Number of Sequences: 5004
Number of extensions: 33416
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 15
length of query: 172
length of database: 2,362,478
effective HSP length: 68
effective length of query: 104
effective length of database: 2,022,206
effective search space: 210309424
effective search space used: 210309424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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