GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001673-TA|BGIBMGA001673-PA|undefined
         (172 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482...    30   0.87 
06_03_1377 - 29692895-29692899,29700435-29702190                       29   2.0  
01_01_0925 - 7306881-7308486,7308797-7308906                           29   2.0  
07_03_1763 - 29316969-29318120                                         29   2.7  
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561     28   3.5  
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686...    28   4.7  
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973...    27   6.2  

>01_05_0461 +
           22446797-22447050,22447171-22447288,22447895-22448217,
           22448908-22449056,22449324-22449463,22449606-22449757,
           22449862-22450021,22450071-22450088
          Length = 437

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 73  AASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSPAWQ 121
           A+STG  +P    +W+ G++   L   L F AA+  ++  + +    WQ
Sbjct: 26  ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74


>06_03_1377 - 29692895-29692899,29700435-29702190
          Length = 586

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 105 AHDRIINAWGHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 162
           +H+R+  +      A    ++ T H  H    +S D    S++    H A SS+ST C
Sbjct: 439 SHERLTISHEKLKEAHDNLLSTTQHGAHIDVGISCDLLDDSATCHIAHVASSSISTSC 496


>01_01_0925 - 7306881-7308486,7308797-7308906
          Length = 571

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 59  KSKSSTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAW 113
           ++K +  +P +  I + T    P HR + S    LH  +  L + A+HD  + AW
Sbjct: 234 RAKKAATLPAKGGILSFTKRRPPHHRDTVSC-LVLHA-VAGLLYTASHDHTVKAW 286


>07_03_1763 - 29316969-29318120
          Length = 383

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 124 ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLR 165
           +++  H    TF +S+     S S G N   FS  + HC+ R
Sbjct: 190 VSYAVHPDQRTFFVSVKEAFCSRSDGGNKGTFSFDTKHCEWR 231


>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
          Length = 495

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 105 AHDRIINAWGHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 162
           +H+R+  +      A    ++ T H  H    +S D    S+     H A SS+ST C
Sbjct: 372 SHERLTISHEKLKEAHDNLLSTTQHGAHIDAGISCDLLDDSAICHVAHVALSSISTSC 429


>03_05_0026 +
           19966616-19966703,19967992-19968058,19968599-19968677,
           19969140-19969231,19969961-19970396,19973749-19974099
          Length = 370

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 124 ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 162
           ++ T H  H    +S D    S+S    H A SS+ST C
Sbjct: 282 LSTTQHGAHIDVGISCDLLDDSASCHIPHVASSSISTSC 320


>03_02_0599 -
           9730204-9730314,9730766-9731549,9731631-9732051,
           9732139-9732385,9733730-9733921,9734071-9734204,
           9734316-9734477,9736162-9736200,9737507-9737825
          Length = 802

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 25  RTVGLPSNITRSVEDLPSVRINNLGYHNPRILE--DKSKSSTV 65
           +TV L S+I RS +D   VRINN    + ++ +  DK++ S +
Sbjct: 425 QTVDLISSIARSTDDKQVVRINNAPDCSSKVPDGNDKNRDSLI 467


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.126    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,290,346
Number of Sequences: 37544
Number of extensions: 209916
Number of successful extensions: 564
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 7
length of query: 172
length of database: 14,793,348
effective HSP length: 77
effective length of query: 95
effective length of database: 11,902,460
effective search space: 1130733700
effective search space used: 1130733700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)