GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001673-TA|BGIBMGA001673-PA|undefined
         (172 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1696|AAF48099.1|  135|Drosophila melanogaster CG15741-P...    28   5.9  

>AE014298-1696|AAF48099.1|  135|Drosophila melanogaster CG15741-PA
           protein.
          Length = 135

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 96  LITPLQFIAAHDRIINAWGHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAF 155
           ++  L  +A+     +    TSPA     T +T  T +T   S  SP +SSS+  +  A 
Sbjct: 8   ILASLLAVASSTSSTSPASSTSPASSTSPTSSTSPTSSTSPTSSTSPTSSSSSSSSSTAT 67

Query: 156 SSVST 160
           ++ +T
Sbjct: 68  TTTTT 72


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.126    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,989,408
Number of Sequences: 52641
Number of extensions: 370278
Number of successful extensions: 1281
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1280
Number of HSP's gapped (non-prelim): 1
length of query: 172
length of database: 24,830,863
effective HSP length: 80
effective length of query: 92
effective length of database: 20,619,583
effective search space: 1897001636
effective search space used: 1897001636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)