Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001673-TA|BGIBMGA001673-PA|undefined
(172 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 30 0.77
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 30 0.77
AF016657-14|AAB93663.3| 495|Caenorhabditis elegans Hypothetical... 29 1.3
Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical pr... 29 1.8
U23528-6|AAK31385.1| 216|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z68003-2|CAA91976.2| 560|Caenorhabditis elegans Hypothetical pr... 28 3.1
AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical ... 28 3.1
AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical ... 28 3.1
Z81084-2|CAB03107.1| 276|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z81043-6|CAB02803.3| 491|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 28 4.1
AL132948-42|CAC51060.2| 887|Caenorhabditis elegans Hypothetical... 27 5.4
AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical ... 27 7.1
U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical pr... 27 9.4
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr... 27 9.4
U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 27 9.4
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 27 9.4
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 27 9.4
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 27 9.4
AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical... 27 9.4
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 30.3 bits (65), Expect = 0.77
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 68 QQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSPAWQLCITWT 127
Q +A G S P + SW+ H L A++D+ + W WQ W
Sbjct: 47 QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101
Query: 128 THDTHAT 134
H+ T
Sbjct: 102 AHEASTT 108
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 30.3 bits (65), Expect = 0.77
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 68 QQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSPAWQLCITWT 127
Q +A G S P + SW+ H L A++D+ + W WQ W
Sbjct: 47 QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101
Query: 128 THDTHAT 134
H+ T
Sbjct: 102 AHEASTT 108
>AF016657-14|AAB93663.3| 495|Caenorhabditis elegans Hypothetical
protein C16C4.13 protein.
Length = 495
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 47 NLGYHNPRILEDKSKSSTVVPQQASIAASTGPSQPTHRASW 87
+ G+H P + ED++K+ VV ++A + A+ G + W
Sbjct: 188 SFGFHLPHVSEDRTKTG-VVEREAKLIAANGKFHSVPKRRW 227
>Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical
protein F36G3.1 protein.
Length = 964
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 140 DSPQTSSSTGDNHAAFSSVSTH 161
D +TSS+T DN+ FS STH
Sbjct: 484 DEVETSSTTADNNIPFSDCSTH 505
>U23528-6|AAK31385.1| 216|Caenorhabditis elegans Hypothetical
protein B0034.4 protein.
Length = 216
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 30 PSNITRSVEDLPSVRINNLGYHNPRILEDKSKSSTVVPQQASIAASTGPSQPT 82
P+ + ++VED V++ + + EDK+++ + + I+ ST P+ PT
Sbjct: 31 PAAVKKAVEDKQPVKVT--AFEQASLNEDKAEAMSNIEPSPKISNSTVPTAPT 81
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 41 PSVRINNLGYHNPRILEDKSKSSTVVPQQA-SIAA--STGPSQPTHRAS 86
P RIN + Y PR++E S + P++A +I A +T PS+ ++ AS
Sbjct: 1472 PESRINQMKYPAPRLVERSSSQNVRSPRKARNIEADETTPPSKRSNSAS 1520
>Z68003-2|CAA91976.2| 560|Caenorhabditis elegans Hypothetical
protein E02H4.2 protein.
Length = 560
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 117 SPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLR 165
+P+ + T + + + + SL PQT + GD + ++S T+C+ R
Sbjct: 324 APSLSIQSTDSFNSAYEDAEESLIQPQTKKNEGDAYGKYNSTLTNCQTR 372
>AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical
protein D1007.13a protein.
Length = 142
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 67 PQQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSP 118
P + +ST S P +S +YG+ + P F + ++WG T P
Sbjct: 15 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 66
>AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical
protein D1007.13b protein.
Length = 247
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 67 PQQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSP 118
P + +ST S P +S +YG+ + P F + ++WG T P
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 171
>Z81084-2|CAB03107.1| 276|Caenorhabditis elegans Hypothetical
protein F46A9.2 protein.
Length = 276
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 57 EDKSKSSTVVPQQASIAASTGPSQPTHRASWSYG---TQLHCLITPLQFIAAHDRII 110
+D KSS S+ PS P+H W+Y T L+ I+P F +D+ +
Sbjct: 15 DDDKKSSDADIYNTSVKLED-PSAPSHDEQWTYNFFITPLNLNISPTDFKIPNDKSV 70
>Z81043-6|CAB02803.3| 491|Caenorhabditis elegans Hypothetical
protein C29F3.7 protein.
Length = 491
Score = 27.9 bits (59), Expect = 4.1
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 17 IQVPNNSIRTVGLPSNITRSVEDLPSVRINNLGYHNPRILEDKSKSSTVVPQQASIAAST 76
I VP N T+ L NIT S V+ + + ++ KS+S V +I ST
Sbjct: 66 INVPQNYFATIQLTVNITSSNNKSAPVQAVDQMQNVEQVFSTKSESFYFVSNGGNIKLST 125
Query: 77 G 77
G
Sbjct: 126 G 126
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 27.9 bits (59), Expect = 4.1
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 54 RILEDKSKSSTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPLQFIAAHDRIINAW 113
R EDK SST VP AS + S+ S +S S +Q T ++
Sbjct: 347 RTSEDKPSSSTTVPTSASTSESSTSSPMAETSSSSTTSQSSPASTSTVPESSTVGSTPTT 406
Query: 114 GHTSPAWQLCITWTTHDTH--ATFKLSLDSPQTSSS-TGDNHAAFSSVST 160
G T+ + T T+ H +TF + ++P+TS+ T + ++ S ST
Sbjct: 407 GLTTLSTNEQSTSTSSGGHSTSTFGTTSETPETSTDFTATSTSSSSDSST 456
>AL132948-42|CAC51060.2| 887|Caenorhabditis elegans Hypothetical
protein Y39B6A.47 protein.
Length = 887
Score = 27.5 bits (58), Expect = 5.4
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 22 NSIRTVGLPSNITRSVEDLPSVRINNLGYHNPRILEDKSKSSTVVPQQASIAASTGPSQP 81
NSI TV L ++ S + S R + + +P L+ K T++P G SQP
Sbjct: 585 NSIGTVSLSASSKSSSGRVLSSRPHTVQIFSPIFLQPKRL--TLIPDSKFQLEVVGGSQP 642
Query: 82 THRASWSYGTQLHCLITPLQFIAAHD 107
T +S + I P I + +
Sbjct: 643 TPPLDFSLNNSMIASIEPNTLITSSE 668
>AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical
protein K06A5.4 protein.
Length = 877
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 11 DKAHIYIQVPNNSIRTVGLPSNIT-RSVEDLPSVRINNLGYHNPRILEDKSK 61
D++ + ++ P + + G ++I + VED P R NN +++PR+ + K+K
Sbjct: 742 DQSLLALRTPIVTKKRGGTRASIMPKPVEDSPMSRGNNSTFNSPRLEQTKAK 793
>U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical
protein F45E4.3b protein.
Length = 836
Score = 26.6 bits (56), Expect = 9.4
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 14 HIYIQVPNNSIRTVG-LPSNITRSVEDLPSVRINN 47
H+ Q P N G LP N R DLP + I N
Sbjct: 512 HLPQQPPTNYSYNYGSLPRNFERGFSDLPPIEIEN 546
>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
protein F45E4.3a protein.
Length = 1231
Score = 26.6 bits (56), Expect = 9.4
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 14 HIYIQVPNNSIRTVG-LPSNITRSVEDLPSVRINN 47
H+ Q P N G LP N R DLP + I N
Sbjct: 512 HLPQQPPTNYSYNYGSLPRNFERGFSDLPPIEIEN 546
>U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical
protein K02A2.3 protein.
Length = 1020
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 31 SNITRSVEDLPSVRINNLGYHNPRILEDKSKSSTVVPQQASIAASTGPSQPTH 83
+ + R ++ +R + GY N +ED K V+ + + A S P H
Sbjct: 860 AEVERKQKEREEMRRSKSGYLNDGFMEDNGKPRQVMMRHSDSARSFSPQPGAH 912
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 26.6 bits (56), Expect = 9.4
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 20 PNNSIRTVGLPSNITR-SVEDLPSVRINNLGYHNPRILEDKSKSSTVVPQQASIAASTGP 78
P NS VG SN R S +D+ +N+L ++P ++ + P + ST
Sbjct: 1256 PRNSGGLVGYSSNAARESTQDIHRA-LNDLELNSPLARSTPNEEYRIPPPRVPTVTSTSS 1314
Query: 79 S-QPTH--RASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSP 118
+ P H R + YG Q T + I A + ++ +TSP
Sbjct: 1315 NYAPLHSIRPASMYGYQSPSSSTTV--IPAPKGVASSSNNTSP 1355
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 26.6 bits (56), Expect = 9.4
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 20 PNNSIRTVGLPSNITR-SVEDLPSVRINNLGYHNPRILEDKSKSSTVVPQQASIAASTGP 78
P NS VG SN R S +D+ +N+L ++P ++ + P + ST
Sbjct: 274 PRNSGGLVGYSSNAARESTQDIHRA-LNDLELNSPLARSTPNEEYRIPPPRVPTVTSTSS 332
Query: 79 S-QPTH--RASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSP 118
+ P H R + YG Q T + I A + ++ +TSP
Sbjct: 333 NYAPLHSIRPASMYGYQSPSSSTTV--IPAPKGVASSSNNTSP 373
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 26.6 bits (56), Expect = 9.4
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 20 PNNSIRTVGLPSNITR-SVEDLPSVRINNLGYHNPRILEDKSKSSTVVPQQASIAASTGP 78
P NS VG SN R S +D+ +N+L ++P ++ + P + ST
Sbjct: 1254 PRNSGGLVGYSSNAARESTQDIHRA-LNDLELNSPLARSTPNEEYRIPPPRVPTVTSTSS 1312
Query: 79 S-QPTH--RASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSP 118
+ P H R + YG Q T + I A + ++ +TSP
Sbjct: 1313 NYAPLHSIRPASMYGYQSPSSSTTV--IPAPKGVASSSNNTSP 1353
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 26.6 bits (56), Expect = 9.4
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 20 PNNSIRTVGLPSNITR-SVEDLPSVRINNLGYHNPRILEDKSKSSTVVPQQASIAASTGP 78
P NS VG SN R S +D+ +N+L ++P ++ + P + ST
Sbjct: 1254 PRNSGGLVGYSSNAARESTQDIHRA-LNDLELNSPLARSTPNEEYRIPPPRVPTVTSTSS 1312
Query: 79 S-QPTH--RASWSYGTQLHCLITPLQFIAAHDRIINAWGHTSP 118
+ P H R + YG Q T + I A + ++ +TSP
Sbjct: 1313 NYAPLHSIRPASMYGYQSPSSSTTV--IPAPKGVASSSNNTSP 1353
>AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical
protein Y50D7A.8 protein.
Length = 569
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 50 YHNPRILEDKSKSSTVVPQQASIAASTGPSQPT 82
Y+N + + S SS PQQ S +++T P P+
Sbjct: 425 YNNLSTINEPSSSSLPPPQQPSTSSTTEPVPPS 457
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.126 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,370,480
Number of Sequences: 27539
Number of extensions: 171130
Number of successful extensions: 414
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 23
length of query: 172
length of database: 12,573,161
effective HSP length: 77
effective length of query: 95
effective length of database: 10,452,658
effective search space: 993002510
effective search space used: 993002510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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