GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001673-TA|BGIBMGA001673-PA|undefined
         (172 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35940.1 68414.m04463 AT hook motif-containing protein-relate...    30   0.97 
At1g75080.2 68414.m08720 brassinosteroid signalling positive reg...    29   2.2  
At1g75080.1 68414.m08719 brassinosteroid signalling positive reg...    29   2.2  
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960...    27   5.2  
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ...    27   5.2  
At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase fam...    27   5.2  
At5g46370.1 68418.m05707 outward rectifying potassium channel, p...    27   9.0  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   9.0  
At3g47130.1 68416.m05117 F-box family protein-related contains w...    27   9.0  

>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
            very low similarity to SP|Q9UUA2 DNA repair and
            recombination protein pif1, mitochondrial precursor
            {Schizosaccharomyces pombe}; contains weak hit to
            PF02178: AT hook motif
          Length = 1678

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 17   IQVPNNSIRTVGLPSNITRSVEDLPSVRINNLGYHNPRILED 58
            I  PN+ + T+ +P ++  +  D P   I N  Y +P+IL +
Sbjct: 1413 INEPNDGVATIDIPEDLLITNADKPIETITNEIYGDPKILHE 1454


>At1g75080.2 68414.m08720 brassinosteroid signalling positive
           regulator (BZR1) identical to to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 336

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 20  PNNSIRTVGLPSNITRSV-EDLPSVRINNLGYHNPRILEDKSKSSTVVPQQASIAASTGP 78
           PNN++ +   P      +   LPS+RI+N     P +    SK+   +P   SIA  +  
Sbjct: 144 PNNNMSSTFFPFLRNGGIPSSLPSLRISNSCPVTPPVSSPTSKNPKPLPNWESIAKQSMA 203

Query: 79  SQPTHRASWSY 89
                 AS++Y
Sbjct: 204 IAKQSMASFNY 214


>At1g75080.1 68414.m08719 brassinosteroid signalling positive
           regulator (BZR1) identical to to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 336

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 20  PNNSIRTVGLPSNITRSV-EDLPSVRINNLGYHNPRILEDKSKSSTVVPQQASIAASTGP 78
           PNN++ +   P      +   LPS+RI+N     P +    SK+   +P   SIA  +  
Sbjct: 144 PNNNMSSTFFPFLRNGGIPSSLPSLRISNSCPVTPPVSSPTSKNPKPLPNWESIAKQSMA 203

Query: 79  SQPTHRASWSY 89
                 AS++Y
Sbjct: 204 IAKQSMASFNY 214


>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 1033

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 17  IQVPNNSIRTVGLPSNITRSVEDLPSVRINNLGYHNPRILED 58
           I  PN+ +  + +P ++  +  D P   I N  Y +P+IL +
Sbjct: 768 INEPNDGVAIIDIPEDLLITNTDKPIESITNEIYGDPKILHE 809


>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
           PF04424: Protein of unknown function (DUF544)
          Length = 682

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 5/35 (14%)

Query: 57  EDKSKSSTVVPQQASIAAS---TGPSQP--THRAS 86
           ED+S  S   PQ  S+AAS   TGP  P  +HR S
Sbjct: 626 EDQSPRSNPTPQPTSVAASRLVTGPQVPRSSHRPS 660


>At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 7 AMPBP7 (AMPBP7)  GI:20799722
          Length = 569

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 15  IYIQVPNNSIRTVGLPSNITRSV-EDLPSVRINNLGYHNPRILE 57
           I ++ P+N I       ++  S  E++ SV + N+ YH+P +LE
Sbjct: 439 IAVKHPDNYIEIKDRSKDVIISGGENISSVEVENVVYHHPAVLE 482


>At5g46370.1 68418.m05707 outward rectifying potassium channel,
           putative (KCO2) identical to KCO2 protein [Arabidopsis
           thaliana] gi|6686780|emb|CAB64717; similar to kco1
           [Arabidopsis thaliana] gi|2230761|emb|CAA69158; member
           of the 2 pore, 4 transmembrane (2P/4TM) K+ channel
           family, PMID:11500563
          Length = 443

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 9   FQDKAHIYIQV--PNNSIRTVGLPSNITRSVEDLPSVRINNLGYHNPRILEDKSKSSTVV 66
           F D   + + +  PN  +R      N  RS        INN+ + N    + +S S T+V
Sbjct: 87  FSDSTDLLLPLTEPNKPVRKSKPTINFHRSKTAPAMAAINNISHPNDPKTDQQSDSKTIV 146

Query: 67  PQQASI 72
            Q  ++
Sbjct: 147 NQAVAL 152


>At3g47910.1 68416.m05224 expressed protein low similarity to
           nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
           GI:189036; contains Pfam profiles PF04780: Protein of
           unknown function (DUF629), PF04781: Protein of unknown
           function (DUF627)
          Length = 1290

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 111 NAWGHTSPAWQLCITWTTHDTHATFKLSLDSP 142
           +AW  T+P    C  W  +++    KLS+  P
Sbjct: 478 DAWNDTTPDGDTCNGWNENESEEEVKLSIAFP 509


>At3g47130.1 68416.m05117 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain;
          Length = 360

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 4   SRLRHFQDKAHIYIQVPNNSIRTVGLPSNITRSVEDLPSVRINNLGYHNPRILEDKSKSS 63
           S L  F+    ++I++P+ +I +   P  +  + +D    ++  +   NP +    S SS
Sbjct: 44  SDLYTFKIACEVFIEIPHLNITSSSAPPRLLIAFQDFHGKKLMLVSSPNPYVSSSSSSSS 103

Query: 64  T 64
           +
Sbjct: 104 S 104


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.126    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,229,208
Number of Sequences: 28952
Number of extensions: 166175
Number of successful extensions: 447
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 11
length of query: 172
length of database: 12,070,560
effective HSP length: 76
effective length of query: 96
effective length of database: 9,870,208
effective search space: 947539968
effective search space used: 947539968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)