Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001672-TA|BGIBMGA001672-PA|undefined
         (206 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7)                30   1.6  
SB_19085| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)          29   2.7  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_45625| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 73  NVIDRRVGIAALIQRRQDEGTQHPDPESDENTMRLKLFRLM 113
           N +DRR G    ++RR+++GT+    + DE   + +L  +M
Sbjct: 758 NELDRRGGKKKKVKRRREDGTEEEVDDEDEEQSQAQLEEIM 798


>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/28 (42%), Positives = 22/28 (78%)

Query: 25  KLQEKILNDLSWNVKLKLLNEYPSSKPS 52
           K+Q++IL+D  +N+++K L E P++K S
Sbjct: 198 KIQKRILSDYLYNLRMKYLAENPNAKIS 225


>SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7)
          Length = 592

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/28 (42%), Positives = 22/28 (78%)

Query: 25  KLQEKILNDLSWNVKLKLLNEYPSSKPS 52
           K+Q++IL+D  +N+++K L E P++K S
Sbjct: 75  KIQKRILSDYLYNLRMKYLAENPNAKIS 102


>SB_19085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 88  RQDEGTQHPDPESDENTMRLKLFRLMYETVRDSDMKANKAVQIRQQYQN 136
           RQ  G  H   E +E   ++++ R + + +RD   K  +A Q +  YQ+
Sbjct: 345 RQGGGGGHGRDEHEEYRKQVEIERQIQDAIRDEQKKKYRAAQYQVDYQD 393


>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
          Length = 1093

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 57  VLRNAISDALMKKQGPNVIDRRVGIAALIQ---RRQDEGTQHPDPESDENTMRLKLFRLM 113
           +LR+A SD ++K+QG ++ +    I+ + +    R D+  QH      E+++ ++ + L+
Sbjct: 252 LLRDARSDQVIKQQGFHIYESGSFISIISRLEDARTDQVMQHKKQHLRESSLLVQRYLLL 311

Query: 114 YETVRD 119
           Y+   D
Sbjct: 312 YDAQSD 317


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/60 (20%), Positives = 32/60 (53%)

Query: 62   ISDALMKKQGPNVIDRRVGIAALIQRRQDEGTQHPDPESDENTMRLKLFRLMYETVRDSD 121
            + + L +++  +++D +  +AA + RRQ+E  +  + +S +  +  +   L     +D+D
Sbjct: 4117 LQEQLEQRKNKSLMDTKAKLAARLARRQEEARRKTEEDSAKRILEEQSLALAANKPKDAD 4176


>SB_45625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 90  DEGTQHPDPESDENTMRLKLFRLMYETVRDSDMKANKAVQIRQQYQNSTPF 140
           D  T    PE D+NT    L R  + T+       ++ +  R +Y++ST F
Sbjct: 89  DTNTARFLPEHDKNTRIFILTRYEHSTISTRTRYEHRTIFTRTRYEHSTIF 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,609,077
Number of Sequences: 59808
Number of extensions: 257125
Number of successful extensions: 612
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 7
length of query: 206
length of database: 16,821,457
effective HSP length: 79
effective length of query: 127
effective length of database: 12,096,625
effective search space: 1536271375
effective search space used: 1536271375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)