Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001672-TA|BGIBMGA001672-PA|undefined
         (206 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 47  PSSKPSGGSPVLRNAISDALMKKQGPNVIDR--RVGIAALIQRRQDEGTQHP-DPESDEN 103
           P+S    GSP      SD +  K  P   +     G + ++      G   P  PE +E 
Sbjct: 279 PNSTTMNGSPGSGGIRSDQMGVKIEPAEAESLSTSGSSGILTPVSPYGYVKPISPEQEEL 338

Query: 104 TMRLKLFRLMYETVRDSDMK 123
             RL  F+  YE   + D+K
Sbjct: 339 IHRLVYFQNEYEQPSEEDLK 358


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,458
Number of Sequences: 429
Number of extensions: 2254
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 1
length of query: 206
length of database: 140,377
effective HSP length: 55
effective length of query: 151
effective length of database: 116,782
effective search space: 17634082
effective search space used: 17634082
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)