GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001672-TA|BGIBMGA001672-PA|undefined
         (206 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   0.99 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   7.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   7.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   7.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   7.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.3  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 138 TPFEVGYLIGDITDKYNVMIDIAATLKRLYREWKPLEHIN-AYEQIASQAIEI--SHLID 194
           TP E G   GD+    +   DIA   K++ R+ KP    +   + +  QAI++   HL++
Sbjct: 102 TPREPGVAGGDVCSSESFNEDIAVFSKQI-RQEKPYYIADPEVDSLMVQAIQVLRFHLLE 160

Query: 195 MAK 197
           + K
Sbjct: 161 LEK 163


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 92  GTQHPDPESDENTMRLKLFRLMYETVRDSDMK 123
           G++   PE +E   RL  F+  YE   + D+K
Sbjct: 307 GSKGISPEQEELIHRLVYFQNEYEHPSEEDVK 338


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 43  LNEYPSSKPSGGSPVLRNAISDALMKKQGPN 73
           L+E    K +  SP LR  ++    KK  PN
Sbjct: 111 LDENKLDKKNDDSPALRALLTRPQAKKTPPN 141


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 43  LNEYPSSKPSGGSPVLRNAISDALMKKQGPN 73
           L+E    K +  SP LR  ++    KK  PN
Sbjct: 111 LDENKLDKKNDDSPALRALLTRPQAKKTPPN 141


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
          protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 46 YPSSKPSGGSP 56
          Y SS PSG SP
Sbjct: 35 YSSSSPSGSSP 45


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
          protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 46 YPSSKPSGGSP 56
          Y SS PSG SP
Sbjct: 35 YSSSSPSGSSP 45


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 43  LNEYPSSKPSGGSPVLRNAISDALMKKQGPN 73
           L+E    K    SP LR  ++    KK  PN
Sbjct: 111 LDENKLDKKDDDSPALRALLTRPQAKKTPPN 141


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,003
Number of Sequences: 317
Number of extensions: 1843
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 206
length of database: 114,650
effective HSP length: 54
effective length of query: 152
effective length of database: 97,532
effective search space: 14824864
effective search space used: 14824864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)