GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001672-TA|BGIBMGA001672-PA|undefined
         (206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    31   0.12 
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    27   2.6  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    26   3.4  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   4.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   4.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   7.9  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    25   7.9  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 28  EKILNDLSWNVKLKLLNEYPSSKPSGGSPVLRNAIS 63
           +KILN L WN+KL L+N +    PS  S  L ++ S
Sbjct: 305 KKILNSLVWNIKLSLIN-FGILSPSASSTPLTDSES 339


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 159 IAATLKRLYREWKPLEHINAYEQIASQAIEISHLIDMAKYVSKRKQRL 206
           IA++  +++RE KPLE     +   S  + IS+ I    Y+  +K  +
Sbjct: 290 IASSFGKVFRERKPLEEFAPQDISRSLLLAISNNIGQIAYLHAQKHNV 337


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 4   IDLKLGIHVENTYATLATNVTKLQEKILNDLSWNVKLKLLN-EYPSSKPSGGSPV 57
           +++K G+ +EN+Y   + N   L +K L  +S   KL+L+  EY    PS G P+
Sbjct: 341 LNVKTGL-LENSYTEFSLNEHPLPKKTLLTISIFEKLRLIRVEY---DPSTGRPL 391


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/65 (21%), Positives = 32/65 (49%)

Query: 7   KLGIHVENTYATLATNVTKLQEKILNDLSWNVKLKLLNEYPSSKPSGGSPVLRNAISDAL 66
           +LG+  E    +L+  +  LQ ++ +++SW  +  +  +   + P    P+   +IS+ +
Sbjct: 840 ELGLDRELGLDSLSVPLHLLQSRLRSNMSWQPEATIKGDQEYAPPPKYPPITAESISNEI 899

Query: 67  MKKQG 71
              QG
Sbjct: 900 GLIQG 904


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 45  EYPSSKPSGGS--PVLRNAISDALMKKQGPNVIDRRVGIA 82
           E PS   S GS  P++  +ISDA+    G +++   VG A
Sbjct: 706 EQPSFGVSSGSVTPIIMQSISDAIYNIGGSSILLELVGTA 745


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 148 DITDKYNVMIDIAATLKRLYREWKPLEHINAYEQI 182
           D+T K + +I   A ++R  +E  P   ++ YEQ+
Sbjct: 267 DLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQL 301


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 148 DITDKYNVMIDIAATLKRLYREWKPLEHINAYEQIAS 184
           +I D  + +   AA LK  YRE   +EH+   E+ A+
Sbjct: 135 NIDDDIDEIEKAAAELKLKYREQDQVEHVAGVEESAT 171


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 940,246
Number of Sequences: 5004
Number of extensions: 37781
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 7
length of query: 206
length of database: 2,362,478
effective HSP length: 70
effective length of query: 136
effective length of database: 2,012,198
effective search space: 273658928
effective search space used: 273658928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)