Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001672-TA|BGIBMGA001672-PA|undefined
(206 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1262 + 27415191-27415279,27415367-27415565,27415635-274157... 33 0.12
07_03_0956 - 22869166-22871145,22871800-22871959,22872311-228723... 31 0.66
06_01_1034 + 8110347-8110943,8111201-8111512,8111841-8112011,811... 29 2.0
07_01_0624 + 4651995-4654715 29 2.7
07_03_0149 - 14452654-14452666,14452943-14454699,14454886-144549... 28 4.7
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 28 6.2
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 28 6.2
>12_02_1262 +
27415191-27415279,27415367-27415565,27415635-27415775,
27415939-27416003,27416111-27416489,27416688-27417149,
27417226-27417546,27418184-27418501
Length = 657
Score = 33.5 bits (73), Expect = 0.12
Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 90 DEGTQHPDPESDENTMRLKLFRLM-YETVRDSDMKANKAVQIRQQYQNSTPFE-VGYLIG 147
+ G +H P++ RL R + + V D D K K +QQ Q + P++ + +
Sbjct: 22 EAGNEHYPPDTSSEEQRLSAIRRIDFSWVIDKDAKKPKKDTAQQQQQQAWPWQGMMESLQ 81
Query: 148 DITDKYNVMIDIAATLKRLY--REWKPLEHINAYEQIASQAIEISHLIDMAKYVSKRKQR 205
+ +V+ID+ +T ++ Y + + + + + +++ L+D A + + QR
Sbjct: 82 QAQQELSVVIDLISTRRQSYLIMQVEANDAVAVAGMLKPKSLPTETLVDTAVSAATKLQR 141
Query: 206 L 206
+
Sbjct: 142 V 142
>07_03_0956 -
22869166-22871145,22871800-22871959,22872311-22872375,
22872464-22872529,22872634-22872691,22872834-22872925,
22873093-22873332
Length = 886
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 144 YLIGDITDKYNVMIDIAATLKRLYREW-KPLEHINAYEQIASQAIEISHLIDMAKYV 199
+LI ++ ++ + T LY +W K +H YE+I+++ +EI A+Y+
Sbjct: 124 FLIALAKERQDLAERVMITRLHLYSKWIKKCDHAKMYEKISNENLEIMRQSAQARYI 180
>06_01_1034 +
8110347-8110943,8111201-8111512,8111841-8112011,
8112780-8114576
Length = 958
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 115 ETVRDSDMKANKAVQIRQQYQNSTPFEVGYLIGDITDKYNVMIDIAATLKRLYREWKPLE 174
+T+ + D KA IR + T + Y GDI D+ ++D + LK ++ + +
Sbjct: 638 DTLLNDDNFTRKAHVIRS-LRELTKDVLHYYKGDILDELPGLVDFSVFLKLSTKQKEIVH 696
Query: 175 HINAYEQIASQAI 187
I AYE+ A+
Sbjct: 697 KIEAYEKFKRSAV 709
>07_01_0624 + 4651995-4654715
Length = 906
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/98 (19%), Positives = 39/98 (39%)
Query: 95 HPDPESDENTMRLKLFRLMYETVRDSDMKANKAVQIRQQYQNSTPFEVGYLIGDITDKYN 154
H P+S L L Y +++ K ++ Y N + E+ +T ++
Sbjct: 596 HKVPDSVSQLFNLHYLDLGYTKLKEIPSSIGKLSNLQTLYLNGSVLELPSETTMLTKLHH 655
Query: 155 VMIDIAATLKRLYREWKPLEHINAYEQIASQAIEISHL 192
++ID+ K + LEH+ I + + + +L
Sbjct: 656 LLIDVGRFGKSASSKISCLEHLQTLRSIEANSYIVKNL 693
>07_03_0149 -
14452654-14452666,14452943-14454699,14454886-14454990,
14455808-14455978,14456309-14456641,14456900-14457492,
14458864-14458906
Length = 1004
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 115 ETVRDSDMKANKAVQIRQQYQNSTPFEVGYLIGDITDKYNVMIDIAATLKRLYREWKPLE 174
+T+ + D K+ IR + T + Y GDI D+ ++D + LK ++ + +
Sbjct: 693 DTLLNDDNFTRKSHVIRS-LRELTKDVLHYYKGDILDELPGLVDFSVFLKLSTKQKEIVH 751
Query: 175 HINAYEQIASQAI 187
I AYE+ A+
Sbjct: 752 KIEAYEKFKRSAV 764
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 45 EYPSSKPSGGSPVLRNAISDALMKKQGPNVIDRRVGIAALIQRRQDEGTQHPDPESDE 102
E P S P+ G R A SD P D G A +RR+ T P PE DE
Sbjct: 209 ESPPSPPTRGRRRKRAATSDP------PPEDDEEEGTPAQPRRRKRAATSDPPPEDDE 260
>03_05_0944 +
29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 154 NVMIDIAATLKRLYREWKPL 173
N+M+D A T LY E+KPL
Sbjct: 195 NIMLDFAITSPSLYAEYKPL 214
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,678,798
Number of Sequences: 37544
Number of extensions: 216352
Number of successful extensions: 512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 7
length of query: 206
length of database: 14,793,348
effective HSP length: 79
effective length of query: 127
effective length of database: 11,827,372
effective search space: 1502076244
effective search space used: 1502076244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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