GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001672-TA|BGIBMGA001672-PA|undefined
         (206 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43160.1 68418.m05268 expressed protein  contains Pfam profil...    30   1.3  
At4g28715.1 68417.m04107 myosin heavy chain, putative similar to...    29   2.2  
At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containi...    29   2.2  
At3g55160.1 68416.m06126 expressed protein                             28   3.9  
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ...    28   3.9  
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ...    28   5.2  
At5g22600.1 68418.m02640 expressed protein ; expression supporte...    27   6.8  
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ...    27   9.0  
At5g03630.1 68418.m00322 monodehydroascorbate reductase, putativ...    27   9.0  
At3g07410.1 68416.m00883 Ras-related GTP-binding family protein ...    27   9.0  

>At5g43160.1 68418.m05268 expressed protein  contains Pfam profile:
           PF04484 family of unknown function (DUF566)
          Length = 445

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 163 LKRLYREWKPLEHINAYEQIASQAIEISHLIDMAKYVS 200
           L+RLY  W+ +   N Y  ++ + IE+ HL    K +S
Sbjct: 274 LRRLYNAWRSIS--NLYNSVSMKRIEMQHLKQNLKLIS 309


>At4g28715.1 68417.m04107 myosin heavy chain, putative similar to
           myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066
          Length = 639

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6   LKLGIHVENTYATLATNVTKLQEKILNDLSWNVKLKLLNEYPSSKPSGGSP 56
           LK  I  E T   L T V +LQEKIL+  S N   K+L +    + SG  P
Sbjct: 140 LKQAIEAETTIVNLKTAVHELQEKILDVESEN---KILRQKSLIQASGHLP 187


>At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q99615 DnaJ homolog
           subfamily C member 7 (Tetratricopeptide repeat protein
           2) {Homo sapiens}; contains Pfam profile PF00515: TPR
           Domain
          Length = 530

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 72  PNVIDRRVGIAALIQRRQDEGTQHPDPESDENTMRLKLFRLMYETVRDSDMKANKAVQIR 131
           P ++ R+    +   ++ D       P+ DEN  R        E+ R S   A K++   
Sbjct: 57  PKILPRKSTDTSSQPKKSDSQKPQQKPKPDENHPRKSS-----ESARKSSDSARKSISSG 111

Query: 132 QQYQNSTPFEVGYLIGDITDKYNVMIDIAATLKRLYREWKPLEH 175
                S  F +  ++G+I  K    +    T  +   E KP+ H
Sbjct: 112 SSRTESKRFSLNGVMGNIIVKPQPAVKTDVTQTKSRWEGKPVNH 155


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 6   LKLGIHVENTYATLATNVTKLQEKILNDLSWNVKLKLLNEY 46
           L+LG   +  Y  LA+   +L  K L D+S N+  ++ N Y
Sbjct: 462 LRLGSRCKGRYVPLASLTRRLGAKTLMDMSPNLLFEMANAY 502


>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
           (beta prime), putative contains 7 WD-40 repeats
           (PF00400) (1 weak); similar to Coatomer beta' subunit
           (Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
           [Homo sapiens]; similar to Coatomer beta' subunit
           (Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
           musculus]
          Length = 920

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 99  ESDENTMRLKLFRLMYETVRDSDMKANKAVQIRQQYQNSTPFEVGYLIGDITDKYNVMID 158
           E   + M L    L+Y ++ D+D     A   ++Q +N+  F   +++G + D  +++++
Sbjct: 688 ECMRHAMDLSGLLLLYSSLGDADGMMKLAALAKEQGKNNVAFLCLFMLGQVEDCLHLLVE 747


>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
           contains weak similarity to Swiss-Prot:P10366 ATP
           phosphoribosyltransferase [Escherichia coli]
          Length = 1402

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 91  EGTQHPDPESDENTMRLKLFRLMYETVRDSDMKANKAVQIRQQYQNSTPFEVGYLI 146
           E  Q+   +  ++T R      +++TVR  D K N ++Q+R+    ST  E+  L+
Sbjct: 833 EDIQNVSVDQVKDTSRRSGHYRLHQTVRPLDEKDNDSIQVRKSLAVSTAAELLKLV 888


>At5g22600.1 68418.m02640 expressed protein ; expression supported
           by MPSS
          Length = 418

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 122 MKANKAVQI-RQQYQNSTPFEVGYLIGDITDKYN 154
           ++ N  V++ R   Q+ T F VGY  GD+  KYN
Sbjct: 149 LRINDNVKVLRVHSQSLTSFSVGYHPGDLIRKYN 182


>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           EMBL:D86122
          Length = 915

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 26  LQEKILNDLSWNVKLKLLNEYPSSKPSGGSPVLRNAISDALMKKQGPNVIDRRVGIAALI 85
           LQ K+L     +++  +  E PS K +    +L N + D+ +  Q  N + +  G    I
Sbjct: 273 LQNKLLRGTKLDIRYSISKENPSQKDTSKGALLVNNL-DSSISNQELNRLVKSYGEVKEI 331

Query: 86  QRRQDEGTQ 94
           +R   + +Q
Sbjct: 332 RRTMHDNSQ 340


>At5g03630.1 68418.m00322 monodehydroascorbate reductase, putative
           monodehydroascorbate reductase (NADH), cucumber,
           PIR:JU0182
          Length = 435

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 143 GYLIGDITDKYNVMIDIAATLKRLYREWKPLEHINAYEQIASQAIE 188
           G+    + D Y +  D+A    +LY E + +EH++   + A QA++
Sbjct: 284 GFFKTSLPDVYAIG-DVATFPMKLYNEMRRVEHVDHARKSAEQAVK 328


>At3g07410.1 68416.m00883 Ras-related GTP-binding family protein
           contains Pfam profile: PF00071 Ras family
          Length = 217

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 9   GIHVENTYATLATNVTKLQEKILNDLSWNVKLKLLN 44
           G+    T A  ATNV K  E ++ ++  NV  KLLN
Sbjct: 148 GLFFMETSALDATNVDKAFEIVIREIFNNVSRKLLN 183


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,670,534
Number of Sequences: 28952
Number of extensions: 182249
Number of successful extensions: 460
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 11
length of query: 206
length of database: 12,070,560
effective HSP length: 78
effective length of query: 128
effective length of database: 9,812,304
effective search space: 1255974912
effective search space used: 1255974912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)