Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001671-TA|BGIBMGA001671-PA|undefined
         (244 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)                 30   2.0  
SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)         29   4.7  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
          Length = 2084

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 25   INLFLKTDGRHLSPGTVRSLALSNARSGLTQTSEKTEKIKLEGADLFSALLIINTT---- 80
            ++L LKT+ R + PG +R L +    + +   + + E ++L+   L + + ++       
Sbjct: 1230 VHLLLKTNSREIKPG-LRFLVVCGEANDVADLTRQKEDLELQIPTLKAKVSLLKKACKEK 1288

Query: 81   SDIIQDTNQRLSELQY 96
             D I+  N+ + EL++
Sbjct: 1289 DDFIEKLNEEIKELRH 1304


>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
          Length = 798

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 35  HLSPGTVRSLALSNARSGLTQTSEKTEKIKLEGADLFSALLIINTTSDIIQDTNQRLSEL 94
           +L P ++ SL L N RS   +  E     KL  AD+ S  +     SD I D+   L + 
Sbjct: 136 YLRPASIPSLLLCNVRSVAPKIGELDCVAKLNRADVLS--VTETWLSDDIPDSAVSLQDY 193

Query: 95  QYIRQDNVN 103
              R+D  N
Sbjct: 194 ILFRKDRPN 202


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 193 YPTMRSTKKRKMFNMKRFWKNRNKTLYGPTKKPKHP 228
           +  ++  K+R +F   R  K++NK L  P+  PK P
Sbjct: 59  FEAIKKGKRRNLFGSFRRKKSKNKLLPEPSSYPKSP 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,235,721
Number of Sequences: 59808
Number of extensions: 310269
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 3
length of query: 244
length of database: 16,821,457
effective HSP length: 80
effective length of query: 164
effective length of database: 12,036,817
effective search space: 1974037988
effective search space used: 1974037988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)