Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001671-TA|BGIBMGA001671-PA|undefined
(244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 3.3
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 26 4.4
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 4.4
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 5.8
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 26 5.8
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 25 7.6
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 7.6
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 25 7.6
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 7.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.6
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 194 PTMRSTKKRKMFNMKRFWKNRNKTLYGPTKKPKHP 228
PT S RK + KR W +N PT+ P
Sbjct: 79 PTSSSLSTRKRWRQKRLWSFKNFPFRPPTRLTSTP 113
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 159 LANMLHEIENKYAVPYGFGSPYN 181
L NM+H ++ VPY G+ YN
Sbjct: 158 LYNMIHAHHHRLQVPYAMGALYN 180
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 186 KQHFSINYPTMRSTKKRKMFNMKRFWKNRNKTLYGPT 222
K FSINYP + ++ +F + N T++G T
Sbjct: 585 KPEFSINYPPYALDTDTETHDLAQFGVSPNATMHGNT 621
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 183 AVTKQHFSINYPTMRSTKKR-KMFNMKRFWKNRNKTL 218
A+ K I T+ + R K +N+K+ WK+ N T+
Sbjct: 73 AILKNDVGIKCATITPDEARVKEYNLKKMWKSPNGTI 109
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 197 RSTKKRKMFNMKRFWKNRNKTLYGPTKKPKHPKKMWDLD 235
RSTK R N KR KN G PKH K DLD
Sbjct: 268 RSTKSRPQPNPKRQKKNEKYGFGG----PKHRSKSNDLD 302
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 152 HYW--QIEHLA---NMLHEIENKYAVPYGFGSPY 180
HYW ++ H +H++ ++Y+ P+G + Y
Sbjct: 150 HYWAHRLFHYGIFYRFIHKVHHRYSAPFGLSAEY 183
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 160 ANMLHEIENKYAVPYGFGSPYNDAVTKQHFSINYPTMRSTKKRKM 204
A + + NK + FG+ Y + VT ++NYP + S + ++
Sbjct: 140 AAIFKHLYNKLDPNFRFGARYEEDVTTCLKALNYPFLDSISRSRL 184
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 177 GSPYNDAVTKQHFSINYPTMRS 198
G+ Y D V ++ F+INY TM +
Sbjct: 69 GNRYYDQVLQKSFTINYETMEA 90
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 55 QTSEKTEKIKLEGADLFSALLIINTTSDIIQDTNQRLSELQYIRQ-DNVNTPPFEVGYIT 113
+ K E +K +++ L T D + E+ + + N P G++
Sbjct: 248 ERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVN 307
Query: 114 YVIQEKYRKMVDKYNTSSYMRTK 136
Y E +K VD+ N Y K
Sbjct: 308 YANHECAQKAVDELNDKEYKGKK 330
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.6
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 6 DKRDGKLIKHEETALYEAGINLFLKTDG-RHLSPGTV-RSLALSNARSGLTQTSEKTEKI 63
DK GKL K EE+ + G L + + +L + +S A+++ +S L +T K+ K+
Sbjct: 930 DKLTGKL-KIEESKSSDLGKKLTARQEEISNLKEENMSQSQAITSVKSKLDETLSKSSKL 988
Query: 64 KLEGADLFSALLIINTTSDIIQDTNQRLSE 93
+ + L + + + + + +N+RL +
Sbjct: 989 EADIEHLKNKVSEVEVERNALLASNERLMD 1018
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,163,287
Number of Sequences: 5004
Number of extensions: 45803
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 10
length of query: 244
length of database: 2,362,478
effective HSP length: 71
effective length of query: 173
effective length of database: 2,007,194
effective search space: 347244562
effective search space used: 347244562
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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