GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001671-TA|BGIBMGA001671-PA|undefined
         (244 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0517 + 34466743-34466879,34468478-34468588,34468997-344690...    30   1.5  
11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103           30   2.0  
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     28   8.0  

>03_06_0517 +
           34466743-34466879,34468478-34468588,34468997-34469079,
           34469287-34469404,34469503-34469714,34470167-34470651,
           34470731-34470801,34470898-34470955,34471161-34471192,
           34471193-34471449,34471820-34471974,34472353-34472636,
           34472725-34472842,34473574-34473756,34473848-34474162
          Length = 872

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 165 EIENKYAVPYGFGSPYNDAVT 185
           EI +KY VPYG  +PYN  VT
Sbjct: 750 EIVDKYRVPYGNQAPYNVTVT 770


>11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103
          Length = 404

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 5   KDKRDGKLIKHEETALYEAGINLFLKTDGRHLSPGTVRSLALSNARSGLTQTSEKT--EK 62
           KD+R GK +  E  ++ +  ++ F++   +    G V+  +L+N +  +   + K   E+
Sbjct: 320 KDERSGKRLASEAISVIDQKLDKFIEASSKAEKIGEVQQ-SLANKKLEVANLNHKAAQEQ 378

Query: 63  IKLEGADLFSALLIINTTSDI 83
            K +  DL+  LL+   TSD+
Sbjct: 379 TKSKMIDLYKDLLLA-PTSDL 398


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/64 (18%), Positives = 30/64 (46%)

Query: 173 PYGFGSPYNDAVTKQHFSINYPTMRSTKKRKMFNMKRFWKNRNKTLYGPTKKPKHPKKMW 232
           P+G  + +     K   ++ +P+++  + +++  +K  +   +  L  PT K  H +  W
Sbjct: 797 PHGLNTIFFKDHEKGAINVEFPSLQRMRLQELPLLKHLYDGDDIVLSAPTWKELHVRGCW 856

Query: 233 DLDY 236
            L +
Sbjct: 857 SLQH 860


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,680,676
Number of Sequences: 37544
Number of extensions: 239324
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 3
length of query: 244
length of database: 14,793,348
effective HSP length: 80
effective length of query: 164
effective length of database: 11,789,828
effective search space: 1933531792
effective search space used: 1933531792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)