GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001671-TA|BGIBMGA001671-PA|undefined
         (244 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    29   3.1  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z67755-4|CAA91758.2|  966|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.      28   5.3  
U88309-6|AAB42332.1|  389|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF067947-6|AAO25992.1|  255|Caenorhabditis elegans Hypothetical ...    28   7.1  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 200  KKRKMFNMKRFWKNRNKTLYGPTKKPKHPKKMW 232
            KK K     RF    +K LYG +K+P HP K W
Sbjct: 2148 KKAKTARQLRF----HKKLYGHSKEPSHPTKAW 2176


>Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical
           protein T01G9.3 protein.
          Length = 603

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 46  LSNARSGLTQTSEKTEKIKLEGADLFSALLIINTTSDIIQDTNQRLSELQYIRQDNVNTP 105
           L  AR GLTQTSE    I L G  LF+ALL++      I    +R  +  Y+ +++  TP
Sbjct: 493 LFGARYGLTQTSEML--ILLAGVLLFAALLLM--ILGCIYFLRERQYKGSYVTREHSRTP 548


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 172 VPYGFGSPYNDAVTKQHFSINYPTMRSTKKRKMFNMKRFW 211
           +P G GS  N A   +   + Y TM     + M ++K FW
Sbjct: 145 IPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIKTFW 184


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 157 EHLANMLHEIENKYAVPYGFGSPYNDAVTKQHFSINYPTMRSTKKRKMFNMKRFWKNRNK 216
           EH   ++ E E++Y    G     +      H S+     RST K K   ++   K ++ 
Sbjct: 110 EHARLLVFEAESRYI---GLNFYDSKECENFHNSVCKRQTRSTDKAKQPALEGKKKKKSS 166

Query: 217 TLYGPTKKPKHPKKMWDLDYGWEIDY 242
             + P K  K P+K   +++G  ID+
Sbjct: 167 FYHNPFKSHKEPRK--QVEFGAPIDF 190


>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical protein
            F28B4.3 protein.
          Length = 2229

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 69   DLFSALLIINTTSDIIQDTNQRLSELQYIRQDNVNTPPFEVGYITYVIQEKYRKMVDKYN 128
            D  + L ++ TT       NQ ++ L+ I     N  PF   Y   V  +   +  +KYN
Sbjct: 1548 DTKTLLFVVETTRQNSDTVNQLIANLKNIVTSATNFAPFWFSYFGLVTFDTTGRTFEKYN 1607


>Z67755-4|CAA91758.2|  966|Caenorhabditis elegans Hypothetical
           protein F54F7.5 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 86  DTNQRLSELQYIRQDNVNTPPF 107
           DTNQR+SE++ I+    N PP+
Sbjct: 435 DTNQRISEVKKIQVFRFNVPPY 456


>AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 86  DTNQRLSELQYIRQDNVNTPPF 107
           DTNQR+SE++ I+    N PP+
Sbjct: 435 DTNQRISEVKKIQVFRFNVPPY 456


>U88309-6|AAB42332.1|  389|Caenorhabditis elegans Hypothetical
          protein T23B3.1 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 5  KDKRDGKLIKHEETALYEAGINLFLKTDGRHLSPGTVRSLALS---NARSGLTQTSEKTE 61
          +++ D +     E +L++  +N FLK DG HL     ++ +L    +++  LT+ +++T 
Sbjct: 12 RNQNDEEYSLDMEESLFQNIVNAFLKQDGNHLRDKAAKNKSLRIFLSSQRFLTEYAKRTG 71

Query: 62 KI 63
          ++
Sbjct: 72 RM 73


>AF067947-6|AAO25992.1|  255|Caenorhabditis elegans Hypothetical
           protein T10B5.10 protein.
          Length = 255

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 47  SNARSGLTQTSEKTEKIKLEGADLFSALLIINTTSDIIQDTNQR 90
           S++ SG T TS  + +  L      +ALL I T SD++   N R
Sbjct: 130 SSSVSGSTSTSTSSAEFHLNDGTSIAALLQIATDSDLVFTFNAR 173


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,138,430
Number of Sequences: 27539
Number of extensions: 240666
Number of successful extensions: 643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 9
length of query: 244
length of database: 12,573,161
effective HSP length: 79
effective length of query: 165
effective length of database: 10,397,580
effective search space: 1715600700
effective search space used: 1715600700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)