GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001671-TA|BGIBMGA001671-PA|undefined
         (244 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    26   0.36 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.84 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.9  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 178 SPYNDAVTKQHFSINYPTMRST 199
           SPY+ A    H S N PTM ST
Sbjct: 3   SPYHVAQLPHHLSPNMPTMDST 24


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/42 (21%), Positives = 24/42 (57%)

Query: 154 WQIEHLANMLHEIENKYAVPYGFGSPYNDAVTKQHFSINYPT 195
           W+I H+++    I++K+ + +       + + ++H+S+N  T
Sbjct: 208 WEIVHMSHSESTIDSKFGLGFTTDLLSYNILLRRHYSMNSTT 249


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 219 YGPTKKPKHP--KKMWDLDYGWE 239
           YGP K PK P  KK  ++D G E
Sbjct: 202 YGPEKGPKVPEKKKEDEIDEGKE 224


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 38  PGTVRSLALSNARSGLTQTSEKTEKIKLEGADLFSALL 75
           P +V  L ++N    L + +  T+K+ L   D+++ ++
Sbjct: 616 PDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMI 653


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 86  DTNQRLSELQYIRQDNVNTPPFEVGYITYVIQEKYRKMVD 125
           DT Q +S ++ I+Q + N    +     +++  KY+K+ +
Sbjct: 346 DTLQFISGIKIIKQISSNIYERQNNEYIWIVSNKYQKIAN 385


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,554
Number of Sequences: 429
Number of extensions: 3136
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 244
length of database: 140,377
effective HSP length: 56
effective length of query: 188
effective length of database: 116,353
effective search space: 21874364
effective search space used: 21874364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)