GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001671-TA|BGIBMGA001671-PA|undefined
         (244 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19910.1 68417.m02917 Toll-Interleukin-Resistance (TIR) domai...    29   2.9  
At3g05130.1 68416.m00557 expressed protein ; expression supporte...    29   2.9  
At1g62350.1 68414.m07035 pentatricopeptide (PPR) repeat-containi...    29   2.9  
At1g09450.1 68414.m01057 haspin-related similar to haspin (GI:92...    29   2.9  
At3g21240.1 68416.m02684 4-coumarate--CoA ligase 2 / 4-coumaroyl...    28   5.0  
At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containi...    27   8.8  

>At4g19910.1 68417.m02917 Toll-Interleukin-Resistance (TIR)
          domain-containing protein contains Pfam profile
          PF01582: TIR domain
          Length = 241

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 4  DKDKRDGKLIKHEETALYEAGINLFLKTDGR 34
          + D+ DG  I+H E AL + G N+F+ +D R
Sbjct: 15 ESDQSDG-FIRHVERALNDEGFNVFIDSDER 44


>At3g05130.1 68416.m00557 expressed protein ; expression supported
           by MPSS
          Length = 634

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 53  LTQTSEKTEKIKLEGADLFSALLIINTTSDIIQDTNQRL-SELQYIRQ 99
           + +T E+ EK+K+E   LFSA   + + S+ ++  N +L  EL  +R+
Sbjct: 469 VAKTLEELEKVKIERKSLFSAKNDLESQSESLKSENVKLEKELVELRK 516


>At1g62350.1 68414.m07035 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 225

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 37  SPGTVRSLALSNARSGLTQTSEKTEKIKLEGADLFSALLIINTTSDIIQDTNQ 89
           SP    SL       GL    E  EK+K +  +LF  +++ +   DI +D+++
Sbjct: 164 SPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPEDICEDSDE 216


>At1g09450.1 68414.m01057 haspin-related similar to haspin
           (GI:9229937) {Mus musculus} and haploid germ
           cell-specific nuclear protein kinase (GI:13561418) {Mus
           musculus}
          Length = 599

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 9   DGKLIKHEETALYEAGINLFLKTDGRHLSPGTVRSLALSNARSGLTQTSEKTEKIKLEGA 68
           +   I  E     +A  +L LKT  +  +  T     + +    L        KIK+E  
Sbjct: 177 ENSAIHQESVCDNDAFDSLSLKTPDKSSAGNTSVFRLIPSCDENLAAEDVPVRKIKMESI 236

Query: 69  DLFSALLIINTTSDII---QDTNQRLSEL 94
           DL   L  ++ TSD+I   QD +Q + +L
Sbjct: 237 DLEDELKRLSLTSDLIPTHQDFDQPILDL 265


>At3g21240.1 68416.m02684 4-coumarate--CoA ligase 2 /
           4-coumaroyl-CoA synthase 2 (4CL2) identical to SP|Q9S725
           4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2)
           (4-coumaroyl-CoA synthase 2) {Arabidopsis thaliana}
          Length = 556

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 37  SPGTVRSLALSNARSGLTQTSEKTEKIKLEGADLFSALLIINTTSDIIQDTNQRLSELQY 96
           +P  +   A ++A   +   S   +KIK    D    +LI+ T SD I +   R SEL  
Sbjct: 123 TPAEISKQAKASAAKLIVTQSRYVDKIKNLQND---GVLIVTTDSDAIPENCLRFSELTQ 179

Query: 97  IRQDNVNTPPFEV 109
             +  V++ P ++
Sbjct: 180 SEEPRVDSIPEKI 192


>At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 802

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 27  LFLKTDGRHLSPGTVRSLALSNARSGLTQTSEKTEKIKLEGADLFSALLIINTTSDIIQD 86
           + +K  G + +P     + +S +R+G  + + K   + ++ A +   LLI NTT D+   
Sbjct: 231 VLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTL-MQRAGVEPNLLICNTTIDVFVR 289

Query: 87  TNQRLSELQYI-RQDNVNTPPFEVGY 111
            N+    L+++ R   V   P  V Y
Sbjct: 290 ANRLEKALRFLERMQVVGIVPNVVTY 315


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,704,891
Number of Sequences: 28952
Number of extensions: 214976
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 6
length of query: 244
length of database: 12,070,560
effective HSP length: 79
effective length of query: 165
effective length of database: 9,783,352
effective search space: 1614253080
effective search space used: 1614253080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)