SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001670-TA|BGIBMGA001670-PA|IPR007087|Zinc finger,
C2H2-type, IPR008081|Cytoplasmic fragile X mental retardation protein
interacting protein, IPR010996|DNA polymerase beta, N-terminal-like
         (1615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    36   0.035
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    34   0.14 
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    31   1.3  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    31   1.3  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    31   1.7  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    30   2.3  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   3.1  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    30   3.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    29   4.0  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    29   5.3  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    29   5.3  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    29   7.1  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    29   7.1  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    29   7.1  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    29   7.1  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    29   7.1  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    29   7.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    29   7.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   9.3  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    28   9.3  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    28   9.3  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 36.3 bits (80), Expect = 0.035
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 18/118 (15%)

Query: 208 YICNY--CNKKFVDRVFFKVHIKLHCDV---------CGLLFSSKLKYLQHRHKACRIQK 256
           ++C+Y  C+K F  +   K+H + H +V         C   F ++ ++L+   +  R  K
Sbjct: 53  FVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQ-QHLERHIEVHRKPK 111

Query: 257 KHQC--RICNESYFRYMDLKDH-SLEHLRLC-YVCDV--CKEQFDTKGAMAHHLKFLH 308
            + C    C+E + ++  L+ H S  H  L  Y C    C+ +F TK  + +H+   H
Sbjct: 112 PYACTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAH 169



 Score = 33.9 bits (74), Expect = 0.19
 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 25/155 (16%)

Query: 234 CGLLFSSKLKYLQHRHKA----CRIQKKHQCRICNESYFRYMDLKDHSLE-HLRLCYVCD 288
           C L F++K K   H ++A          H+  + +E + ++  L++H  E H+  C    
Sbjct: 151 CELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVPSC---S 207

Query: 289 VCKEQFDTKGAMAHHLKFLHSGRRPRTLYKILNIGTERLYLCRFCDESSVDKRLIEKHTQ 348
           +C  QF T   + HH+    +    R  Y     G         C +S      ++KH  
Sbjct: 208 ICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEG---------CKKSFTRSSALKKHIS 258

Query: 349 LLPDLSNRAMTGYRDFYFCDQCMRKFSTETDMLQH 383
           ++ +  N A       + CD C  KF  +  + +H
Sbjct: 259 VIHE-GNMA-------FHCDSCGTKFGYKHMLQRH 285



 Score = 33.1 bits (72), Expect = 0.33
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 231 CDVCGLLFSSKLKYLQH--RHKACRIQKK-HQCRI--CNESYFRYMDLKDH-SLEHL-RL 283
           C +CG  F +      H   H+    ++K + C +  C +S+ R   LK H S+ H   +
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265

Query: 284 CYVCDVCKEQFDTKGAMAHHLK 305
            + CD C  +F  K  +  HL+
Sbjct: 266 AFHCDSCGTKFGYKHMLQRHLE 287



 Score = 29.1 bits (62), Expect = 5.3
 Identities = 42/184 (22%), Positives = 67/184 (36%), Gaps = 27/184 (14%)

Query: 135 CEKSYPTEKKLLKHQDKKH--MIVYERPKKRVSFSDHV-----IVHEVKEYH--KCRKCP 185
           CE  + T++KL  H ++ H  +I Y  P +     +       + + ++E H   C  C 
Sbjct: 151 CELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVPSCSICG 210

Query: 186 KIFK---EYXXXXXXXXXXXXXXXCYICNY--CNKKFVDRVFFKVHIKL--------HCD 232
           + FK                     Y C    C K F      K HI +        HCD
Sbjct: 211 RQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCD 270

Query: 233 VCGLLFSSKLKYLQHRHK-ACRIQKK---HQCRICNESYFRYMDLKDHSLEHLRLCYVCD 288
            CG  F  K    +H  +  C+   K   ++C I ++     + + D   + L    V D
Sbjct: 271 SCGTKFGYKHMLQRHLERGTCKKAHKPYINECGIKHDG-IEGVAIHDQKEKELSSNLVSD 329

Query: 289 VCKE 292
           V K+
Sbjct: 330 VAKK 333


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 259 QCRICNESYFRYMDLKDHSLEHLRL-CYVCDVCKEQFDTKGAMAHHLK 305
           QC IC +S+ R  D + H   H  +  + C  C ++F    A+  H K
Sbjct: 601 QCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYK 648


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 356 RAMTGYRDFYFCDQCMRKFSTETDMLQ-HKWTHFLKTSDNTQVQLQSVLVNKKPKLK 411
           +AM  Y+D +F +  M+     T +L  H   H  KT D  +V   S  +++ P+L+
Sbjct: 195 KAMFNYQDVFFTNMSMKSHKLGTSLLALHALNHVFKTRD--RVLKNSARISQNPELE 249


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 263 CNESYFRYMDLKDHSLEHLR-LCYVCDVCKEQFDTKGAMAHHLKFLHSGR 311
           CN+   R  +++ H   HL    Y CD+CK  F     +  HL+   +GR
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGR 499



 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 256 KKHQCRICNESYFRYMDLKDHSLEHLR-LCYVCDVCKEQFDTKGAMAHH 303
           + ++C +C   + R+ DLK H   H     YVC+ C ++F+   A+  H
Sbjct: 471 RPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLKRFNRLDALNRH 518


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 23/97 (23%), Positives = 43/97 (44%)

Query: 488 RRLCHAEKRRDFVSEAYLLTLGKFVNMFAVLDELKNMKSSVKNDYSTYRRAAQFLKVMSD 547
           ++L ++EK+    +E Y L   +   +   L ++K       + Y T       LK +++
Sbjct: 64  QQLRNSEKKLLQSNERYDLLEDERKLLENELSQIKEYLREKSSSYDTVLHDCSSLKSVNE 123

Query: 548 SQSLQESQNLSMFLATQNKIRDTVKDALEKINGYEDL 584
           +    + QNL      QN + D  K+  +KI   +DL
Sbjct: 124 ALKQAQDQNLKQTAQLQNLLSDKEKEVEKKITIIKDL 160


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 461 VDPKSKKTIVSKHQCPRKAIERFCAEVRRLCHAEKRRDFVSEAYLLTLGKFVNMFAVLDE 520
           ++ K    + S  +  RK +E  CA ++ L +  K    V E  L    KF +   +  E
Sbjct: 290 LNKKLSTELESIKEASRKEMETHCATIQTLENEVKEARKVKEESLTLANKFSDYDEIKRE 349

Query: 521 LKNMKS-SVKNDYSTYRRAAQFLKVMSDSQSLQESQNLSMFLATQNKIRDTVKDALEKIN 579
           L  +K      +++T+   +   +++   + L  S+ L+   +T  ++ D +    +K +
Sbjct: 350 LSVLKQIEFSGEHATHENTSLESQLLKREKQL--SEELAKLRSTNAQLTDRITQESKKAS 407

Query: 580 GYE 582
             E
Sbjct: 408 FLE 410


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 714 SNEVTTTFKEAGSDSENKAVTELCLRGLQLLSSWCSVLTELCSWKLLHPTDHTINARCPP 773
           +NE+  T ++A  ++ +K VTE  +   +++       T + +  +L PTD  IN     
Sbjct: 358 ANELDNTSEKATLETSSKPVTEQAIEQSEVVQEVEEGDTNMTTNTILKPTDEIIN----- 412

Query: 774 EAEEYERATRYNYTSEEKFAMI 795
           +   Y   + ++  S EKF  I
Sbjct: 413 KGYAYSITSSHSNHSNEKFEQI 434


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 375 STETDMLQHKWTHFLKTSDNTQVQLQSVLVNKKPKLKTTYKVNDVIPERFNPKVVLEKLA 434
           S   DM +H ++  ++ +  TQV     L+ K    K+  K+N  + E  +     E ++
Sbjct: 78  SVSNDMFKHVYSQNVELNHKTQVDFTEQLIPK----KSLNKLNGTLRETMSRMPSFESIS 133

Query: 435 IDPFPNYMSFNCKKFDIVTGE 455
           +    N +  +C   D +T E
Sbjct: 134 LSETSNALDDSCFNDDWITIE 154


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 496 RRDFVSEAYLLTLGKFVNMFAVLDELKNMKSSVKNDYSTYRRAAQFLKVMSDSQSLQESQ 555
           R D V  +Y+  LGK V++  +   L+  K     ++  + +AAQ  K+  D  SL+ + 
Sbjct: 206 RPDAVVLSYIFVLGKAVDLLQIKQWLQLSKQKNLLEFEFWSQAAQHYKL--DVNSLRNAY 263

Query: 556 NL 557
           NL
Sbjct: 264 NL 265


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 213 CNKKFVDRVFFKVHIKLHCDVCGLLFSSKLKYLQHR---HKACRIQKKHQCRICNESY 267
           C+    D++   ++  +HC  CG +F +     Q +   H     +    CR+C E Y
Sbjct: 140 CHDPMCDKLLNFINGHIHCRKCGYIFCNFHSMYQIKLSIHATYDSENGFWCRVCRECY 197


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 1020 RTKEPAMMEYVLYPLDLYNDSA-QYALTVFKKQFLYDEVEAEVNLCFDQFVYKLSEQVYA 1078
            ++ E A++E  L P   YN+ A  Y L V+  ++++ E + + + C   F+  +SE +  
Sbjct: 861  KSAEDAIVEMNLIPA-WYNEKAINYGLIVYLLKYIFTEGDPKFSKCVLVFLPGISEILRV 919

Query: 1079 YYKQLAASMLLDKRYRAECL 1098
              K L   M + + +R  C+
Sbjct: 920  --KSLIEDMPMFRNHRKFCI 937


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/71 (22%), Positives = 32/71 (45%)

Query: 529 KNDYSTYRRAAQFLKVMSDSQSLQESQNLSMFLATQNKIRDTVKDALEKINGYEDLLADV 588
           K+   +YR+  Q L+ + + Q   E     +    +N I   VK     +N  + +L+D 
Sbjct: 724 KDMKESYRQLVQELRSLYNLQHTHEESQKELMYGVRNDIDALVKTCTTSLNDADIILSDY 783

Query: 589 VNICVHMFETR 599
           ++     FE++
Sbjct: 784 ISDQKSKFESK 794


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 530 NDYSTYRRAAQFLKVMSDSQSLQESQNLSMFLATQNKIRDTVKDALEKI 578
           ND+   R A+ ++  +S S ++ +S  +S+F    N+  D  KD  + I
Sbjct: 215 NDFIALRDASNYMIRLSISHAIAQSVKISLFEELVNETIDATKDTPQMI 263


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 131 KCNICEKSYPTEKKLLKHQDKKHMIVYERPKKRVSFS 167
           + N   K+Y  E KLL+ Q+KK +++  + K+R  ++
Sbjct: 446 RLNPALKNYMEELKLLEQQNKKRLLLVSQEKERKGYT 482


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 64  KRMNKVK-SDGNNVKKLHEKRITSLCCVLLQREDFLLFRNATRENTKQVD-DTSSSDTEN 121
           +R N VK SDG     L E           Q ++   F+N +  +   +D + +SSD E+
Sbjct: 202 RRKNVVKLSDGERYNSLQEASRKQSERDRRQYQE--TFKNQSIASWTIIDQEETSSDDES 259

Query: 122 ---EMVDPKMAVKCNICEKSYPTEKKLLKHQD-KKH 153
              E+V+    + C +C K++ ++ +L  H++ KKH
Sbjct: 260 LSKEIVNSN-PIMCMVCNKNFRSQNQLENHENSKKH 294


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 106 ENTKQVDDTSSSDTENEMVDPKMAVKCNICEKSYPTEKKLLKHQ 149
           EN+  V       TE  ++D K    C+ C K +   + L +H+
Sbjct: 7   ENSTNVLSAKRKLTEPSLIDSKRVFPCDQCAKRFTRHENLTRHK 50


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 259 QCRICNESYFRYMDLKDHSLEHLRLCYVCD 288
           +C  CN  ++   +L  H  E    CY+CD
Sbjct: 246 KCEFCNTHFYDDDELFKHCREKHERCYICD 275


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 832 QLVLREPLR---KAIKNKKDLIRSIIVSVRETCGDWARGCEPQQDPALKGKKDGEASFTI 888
           QL  RE  R   + IKN KD+      ++RET   W R    ++D   K +++       
Sbjct: 658 QLCGREARRWQFRTIKNNKDMQTKAKRAMRETMVFWKRNERVERDLRKKAEREALDRAKK 717

Query: 889 KVPRRNVGPSSTQLYMVRTQLEALISDKSGGRRTLRKDLDAAT 931
           +   R     + +L  + TQ E L S   G +    +DL +AT
Sbjct: 718 EEELRESRRQARKLDFLITQTE-LYSHFVGRKMDREQDLPSAT 759


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 412 TTYKVNDVIPERFNPKVVLEKL-AIDPFPNYMSFNC-----KKFDIVTGEIKKAIVDPKS 465
           T   + +++P  F+  VVL+ L   D F  +++ N      K+ + V  EIK++ +   +
Sbjct: 340 TNIIIENILPSSFSKPVVLKALNGNDKFVCFLTVNTLLASFKRLESVLDEIKRSELSEDN 399

Query: 466 KKTIVSK 472
           K  +VSK
Sbjct: 400 KVELVSK 406



 Score = 28.3 bits (60), Expect = 9.3
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 465 SKKTIVSKHQCPRKAIERFCAEVRRLCHAEKR-------RDFVSEAYLLTLGKFVNMFAV 517
           SK+  ++  Q P + +   C  +R     E+         +F+ +      G  VN   V
Sbjct: 763 SKEETMATSQSPIRTLLSACINLRPFLLQEQYISFNMDFAEFLIDTNASIKGSVVNT-CV 821

Query: 518 LDEL-KNMKSSVKNDYSTYRRAAQFLKVMSDSQSLQESQNLSMFLATQNKI 567
           LD L K+    V+ +Y+  R AA+F+ + +  + +  S+ L  FL+  + +
Sbjct: 822 LDFLYKSFSDKVQENYNLIRIAAKFMLLWTQEEFIGFSKALDSFLSENDDL 872


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 548 SQSLQESQNLSMFLATQNKIRDTVKDALEKINGYEDLLAD 587
           S++L+E +NL    A ++K +D +     KIN YED   D
Sbjct: 342 SETLEEEENLLALAAKRSKKKDVITVDHSKIN-YEDFKKD 380


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 889 KVPRRNVGPSSTQLYMVR-TQLEALISDKSGGRRTLRKDLDAATLHQIESFHRTSFYWSY 947
           +VPR+ + P S  L + R T +E  I      ++ LRK L+   +H ++  H  S+  +Y
Sbjct: 285 RVPRKTISPWSQCLLVARQTDVENSIRLDFISKK-LRKRLNGDVVHNLDVPHDKSYKSNY 343

Query: 948 LLNL 951
           L ++
Sbjct: 344 LFSV 347


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,057,528
Number of Sequences: 5004
Number of extensions: 292250
Number of successful extensions: 860
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 40
length of query: 1615
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1533
effective length of database: 1,952,150
effective search space: 2992645950
effective search space used: 2992645950
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)

- SilkBase 1999-2023 -