Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001670-TA|BGIBMGA001670-PA|IPR007087|Zinc finger,
C2H2-type, IPR008081|Cytoplasmic fragile X mental retardation protein
interacting protein, IPR010996|DNA polymerase beta, N-terminal-like
(1615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241... 357 4e-98
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 38 0.088
03_06_0280 + 32823004-32823537 35 0.62
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 34 0.82
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367... 34 0.82
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 32 3.3
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 32 3.3
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 31 5.8
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 31 5.8
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 31 7.6
04_04_1169 - 31446291-31446395,31446789-31446918,31447047-314471... 31 7.6
>03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,
2416288-2416365,2416880-2416999,2418021-2418091,
2418808-2418900,2419242-2419311,2420236-2420436,
2421345-2421557,2422354-2422440,2422441-2422652,
2422901-2423042,2423424-2423592,2424050-2424126,
2424393-2424563,2425095-2425171,2425299-2425401,
2426066-2426185,2426301-2426444,2426826-2426975,
2427398-2427541,2427816-2427903,2428672-2428799,
2429329-2429533,2429843-2430015,2430174-2430392,
2430490-2430684
Length = 1213
Score = 357 bits (878), Expect = 4e-98
Identities = 251/795 (31%), Positives = 390/795 (49%), Gaps = 55/795 (6%)
Query: 778 YERATRYNYTSEEKFAMIEVIAMIKGLQVLMARMETVFADAARRSIYAELQDFVQLVLRE 837
Y + R+NYT EE+ A++E+I IK + ++M R +T+ ++A +I+ E+QDFVQ L
Sbjct: 373 YMQVVRWNYTGEERRALLELIGYIKSIGLMMQRCDTLVSEALWETIHMEVQDFVQDKLDT 432
Query: 838 PLRKAIKNKKDLIRSIIVSVRETCGDWARGCEPQQDPALKGKKDGEASFTIKVPRRNVGP 897
LR + KKDL R I+ +R DW + DP + E + PR V P
Sbjct: 433 MLRTTFRKKKDLSR-ILSDMRTLSADWMANTS-KGDPEHNSLETEEMRQSTFYPRP-VAP 489
Query: 898 SSTQLYMVRTQLEALISD----KSGGR-RTLRKDLDAATLHQIESFHRTSFYWSYLLNLP 952
++ Q++ ++ + L+S K GG + L Q+E+F ++ ++L+
Sbjct: 490 TAAQIHCLQFLICELVSGGNMRKPGGLFGNSGSGIPVEDLKQLETFFYKLSFFLHILDYT 549
Query: 953 DSLQKCCDLSQLWYREFYLEMTMGKKVNKCMVRHQHNEECNDLVTMEKRIQFPIEMSMPW 1012
++ DL LW+REFYLE + + IQFPIE S+PW
Sbjct: 550 ATIGTLTDLGFLWFREFYLESS-------------------------RVIQFPIECSLPW 584
Query: 1013 ILTEHILRTKEPAMMEYVLYPLDLYNDSAQYALTVFKKQFLYDEVEAEVNLCFDQFVYKL 1072
+L EH+ T++ ++E VL P DLYNDSAQ+ALT K++FLYDE+EAEV+L FD V KL
Sbjct: 585 MLVEHVTETQDAGLLESVLIPFDLYNDSAQHALTCLKQRFLYDEIEAEVDLSFDLLVEKL 644
Query: 1073 SEQVYAYYKQLAASMLLDKRYRAECLSRGAGVGVGPGRYASLLKQRHVALLGRHVDLCAL 1132
+E ++ YYK AAS LLD + C G V P R+ ++ K R V +LGR +DL +L
Sbjct: 645 NEIIFTYYKSCAASTLLDSSFTYLC-DDGEKYFVKPLRFDAIFKLRRVMVLGRTIDLRSL 703
Query: 1133 VAQRINSDMHRALDAAIAKFEAGDITGVVELEGLIAVNRLCHKLLSRYLTLDDFEAVLRE 1192
+ QR+N +D + +FE+GD+ GVVEL+ L+ + L H+ +S++L LD + +L E
Sbjct: 704 ITQRMNKLFRENIDFLLERFESGDLCGVVELQQLLDILELTHQSISKFLELDSYSLMLSE 763
Query: 1193 SDHGV-LAPY-GRVTLHVFWELNYDFLPNYCYNAATARFVKCRGIQFAANVQRERPQQYG 1250
+ L Y R++ ++ E+ DFLPN+ T RFV R ++ + + G
Sbjct: 764 MQENLSLVSYSSRISSQIWNEMQTDFLPNFILCNTTQRFV--RSLKGTHHSSQRSSASTG 821
Query: 1251 HALLW-GSKQLSLVYSAQYTQYNGFVGAAHLHALVRLLGYQXXXXXXXXXXXXXXXXXHG 1309
A + GS L++ Y Y F G H+ A+V+LLG +
Sbjct: 822 KAYFYCGSHDLTMAYQGISGLYRDFFGIPHMFAVVKLLGSRSLPGIIRALLDHISSKITA 881
Query: 1310 SLAQFTRALLAALPRHCRLPRYDYGSNGVLGYYHAQLTDIVQYPDAKTELFHAFRELGNI 1369
+ + T AL ALP+ L +D G G H LT + + KTE+ H +E+G+
Sbjct: 882 MVPKIT-ALQEALPKSIGLLSFDGGIAGCQKIVHEILTWEAK-SEVKTEVLHDLKEIGSA 939
Query: 1370 ILFCMLIEQALSQEEVTDLLHAAPFQNILP-------RPYSTDGDKPESKQKRLEAKYAS 1422
+ + L++ L Q + T + +AP+ ++P YS + A +S
Sbjct: 940 LYWMSLLDIVLRQIDTTQFMQSAPWLGLIPGNDGQVKHAYSDNTPFTTLLSAATNAVASS 999
Query: 1423 LQIVHNVDKYGTAKQGQLSREGDLLTRERLCCGLSLFGVVLRRLRTCLXXXXXXXXXXXX 1482
+ AKQ + + LL + L G S+ L L
Sbjct: 1000 PACPNPSSFLVMAKQAEAA---SLLYKSNLNSG-SVLEYALAFTSAALDRHYSKWSATPK 1055
Query: 1483 XXXTDDT--NEFHRLWSALQFLYCIPVGDTQFTVEELFGEGLHWAGCTIIALLGQQRRFE 1540
D T +F+R++S LQ+ Y + +E+ G+ + WAGCTI+ LLGQQ+ FE
Sbjct: 1056 TGFIDITTSKDFYRVFSGLQYSY-LEESINPSRKQEMLGDSVAWAGCTIMYLLGQQQHFE 1114
Query: 1541 ALDFCYHILRVQRVD 1555
DF Y L V V+
Sbjct: 1115 LFDFSYQFLNVAEVE 1129
Score = 52.4 bits (120), Expect = 3e-06
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 22/170 (12%)
Query: 479 AIERFCAEVRRLCHAEKRRDFVSEAYLLTLGKFVNMFAVLDELKNMKSSVKNDYSTYRRA 538
A + A+++R E+ + + + ++ K +++ LD LKN K+S+ ND+S Y+R
Sbjct: 127 AASKLAADMQRFSRPERLVNGPTITHFWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRT 186
Query: 539 AQFLKVMSDSQSLQESQNLSMFLATQNKIRDTVKDALEKI-NGYEDLLADVVNICVHMFE 597
F +V +TQ + DT+++ L+ + N ED+L ++ CV E
Sbjct: 187 --FTQV-----------------STQWQDTDTMREELDDLQNSVEDILQVLIVFCVESLE 227
Query: 598 TRMYLTPCEKHMLVKVMGFGLFLMDSEVCNINRLDQKKKIRLDRIDRIFK 647
L E+H L++V+ + L S L K+++++R+ IFK
Sbjct: 228 LDFALLFPERHTLLRVLPVLVVLATSSEKESESL--YKRVKMNRLLNIFK 275
Score = 32.7 bits (71), Expect = 2.5
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 735 ELCLRGLQLLSSWCSVLTELCSWKLLHPTDHTINARCPPEAEEYERATRYNYTSEEKFAM 794
++ + G QLLS W + E C+WK P + PP ++ T ++Y E+ F M
Sbjct: 299 DIVVEGFQLLSRWTGRIWEQCAWKFSRP------CKEPPSDSQHGSTTFFDY--EKVFLM 350
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 37.5 bits (83), Expect = 0.088
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 231 CDVCGLLFSSKLKYLQHRHKACRIQKKHQCRI--CNESYFRYMDLKDHSLEHLRLCYVC- 287
C CG F QH ++ C + C SY R L H L+H + C
Sbjct: 62 CQECGASFQKPAHLKQHMQSHSD-ERSFICPLEDCPFSYIRKDHLNRHMLKHQGKLFTCS 120
Query: 288 -DVCKEQFDTKGAMAHHLKFLH 308
D C +F K M H+K +H
Sbjct: 121 MDGCGRKFSIKANMQRHVKEIH 142
Score = 31.5 bits (68), Expect = 5.8
Identities = 49/184 (26%), Positives = 73/184 (39%), Gaps = 30/184 (16%)
Query: 131 KCNICEKSYPTEKKLLKHQDKKHMIVY---ERPKKRVSFSD-HVIVHEVKEYHKCRKCPK 186
KC C + KK L + HM+ + E K + S+ +VHE H C++C
Sbjct: 15 KCEFC--TVVRSKKCLI---RAHMVAHHKEELDKSEIYKSNGEKVVHEGD--HTCQECGA 67
Query: 187 IFKEYXXXXXXXXXXXXXXXCYIC-------NYCNKKFVDRVFFKVHIKLH-C--DVCGL 236
F++ +IC +Y K ++R K KL C D CG
Sbjct: 68 SFQKPAHLKQHMQSHSDERS-FICPLEDCPFSYIRKDHLNRHMLKHQGKLFTCSMDGCGR 126
Query: 237 LFSSKLKYLQHR---HKACRIQKKHQCRICNES----YFRYMD-LKDHSLEHLRLCYVCD 288
FS K +H H+ K ++ +C E F+Y +K H H++L YV
Sbjct: 127 KFSIKANMQRHVKEIHEDETATKSNRQFVCKEEGCNKVFKYASKMKKHEESHVKLDYVEV 186
Query: 289 VCKE 292
VC E
Sbjct: 187 VCCE 190
>03_06_0280 + 32823004-32823537
Length = 177
Score = 34.7 bits (76), Expect = 0.62
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 1070 YKLSEQVYAYYKQLAASMLLDKRYRAECLSRGAGVGVGPGRYASLLKQRHVALLGRHVDL 1129
Y+ +E + AY + ++L +RA CL+ GAG G G GR + A R +L
Sbjct: 34 YQSTEPLLAYLRD---TVLPHPWFRAICLATGAGAGDGDGRPVGAVSLAPTADACRG-EL 89
Query: 1130 CALVAQRI--NSDMHRALDAAIAKFEAGDITGVVELEGLIAV-NRLCHKLLSR 1179
+VA+ A+ A+A G+++G+ +E L+ V NR +++ +
Sbjct: 90 GYVVARAHWGKGVATAAVRRAVAAVLGGEVSGLARVEALVDVDNRASQRVVEK 142
>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 34.3 bits (75), Expect = 0.82
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 123 MVDPKMA---VKCNI-CEKSYPTEKKLL-KHQDKKHMI--VYERPKKRVSFSDHVIVHEV 175
M D +MA +K N+ CEK +K+L K +DK+ +I VYE RV S H E+
Sbjct: 1 MADKQMASLIIKANLECEKCCKKIQKVLNKLKDKEKIINIVYENSNNRVIISGHFKPEEL 60
Query: 176 KEYHKCRKC 184
+C+ C
Sbjct: 61 AHKLRCKAC 69
>07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,
3679149-3679212,3679316-3679410,3679477-3679584,
3679679-3679752,3680338-3680410,3680539-3680586,
3680694-3680877,3681262-3681440,3682167-3682259,
3682738-3682851,3683570-3683644,3683852-3684112,
3684821-3684934,3685473-3685529,3686668-3686863,
3686922-3686986,3687112-3687195,3688155-3688223,
3688545-3688844
Length = 865
Score = 34.3 bits (75), Expect = 0.82
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 1529 IIALLGQQRRFEALDFCYHIL--RVQRVDGKDELVKGIPLKRMVDRIRRFQVLNSQIFGV 1586
++ G+++ F+A+D L V+ + G DELVK + +K + R + L ++ +
Sbjct: 270 LVQKCGKKKMFDAIDLPPPELYRHVEDISG-DELVKALQIKEKILRRKALSALEEKVITI 328
Query: 1587 LSRQ--LSADDAAGV 1599
LS Q ++ D+++GV
Sbjct: 329 LSEQGYVAKDESSGV 343
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 32.3 bits (70), Expect = 3.3
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 287 CDVCKEQFDTKGAMAHHLKFLHSGRRPRTLYKILNIGTERLYLCRFCDESSVDKRLIEKH 346
C +C ++F + H +H + R L+ R Y C C +S ++R++E+H
Sbjct: 465 CKICSQEFSDDQGLGLHWTEVHK-KEVRWLF--------RGYSCAVCMDSFTNRRVLERH 515
Query: 347 TQLLPDLSNRAMTGYRDFYFCDQCMRKFSTETDMLQHKWTHFL 389
Q + Y C C F TD+L W H +
Sbjct: 516 VQ---EKHGAQYLQYSTLLRCISCNSNF-LNTDLL---WQHIV 551
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 32.3 bits (70), Expect = 3.3
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 210 CNYCNKKFVDRVFFKVHIKL------HCDVCGLLFSSKLKYLQHR 248
C+ C+KK+ + +K H K+ CD CG +FS K ++ HR
Sbjct: 144 CDRCSKKYAVQSDWKAHTKICGTKEYRCD-CGTIFSRKDSFITHR 187
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 31.5 bits (68), Expect = 5.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 210 CNYCNKKFVDRVFFKVHIK------LHCDVCGLLFSSKLKYLQHR 248
C C K++ +K H+K CD CG+LFS K L HR
Sbjct: 126 CERCGKRYAVHSDWKAHVKNCGTREYRCD-CGILFSRKDSLLTHR 169
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 31.5 bits (68), Expect = 5.8
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 465 SKKTIVSKHQCPRKAIERFCAEVRRLCHAEKRRDFVSEAYLLTLGKFVNMFAVLDELKNM 524
SK T +SK Q +ER E R E + V EA +L K + ++ELK +
Sbjct: 956 SKATEISKLQTTLHEMERRVEEARATQERESAKKVVEEALVLEREKIALLTKEVEELKVL 1015
Query: 525 KSSVKNDYSTYRRAAQFLKVMSDSQSLQESQNLSMFLATQN--KIRDTVKDALEKINGYE 582
+ + + A S +Q + + +A +N +++DT+K E G E
Sbjct: 1016 LLKEQEEKNATNSA------FSIAQERNDDLTKKVEVANENFKQLKDTLKSFEESTKGLE 1069
Query: 583 DLL 585
L
Sbjct: 1070 TSL 1072
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 31.1 bits (67), Expect = 7.6
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 247 HRHKACRIQKKHQCRICNESYFRYMDLKDHSLEHLRL-CYVCDVCKEQFDTKGAMAHHLK 305
HRH C + Q + +++ R+ + + S R+ C++ D CK F K + H+K
Sbjct: 410 HRHVVCDVCGTKQLK---KNFKRHQRMHEGSCVTERVRCHLKD-CKLSFSKKSNLDKHVK 465
Query: 306 FLHSGRRP 313
+H +RP
Sbjct: 466 AVHEQKRP 473
>04_04_1169 - 31446291-31446395,31446789-31446918,31447047-31447126,
31447396-31447474,31448178-31448315,31448386-31448522
Length = 222
Score = 31.1 bits (67), Expect = 7.6
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 1130 CALVAQRINSDMHRALDAAIAKFEAGDITGVVELEGLIAVNRLCHKL--LSRYLTLDDFE 1187
C+ V +NSD +R ++ +E GD G+ + A+ L H + L++ L D +
Sbjct: 143 CSEVQAFLNSDQNRCAMKLLSAYEEGDAEGIKQAAQSSAIKHLDHVVIRLAKKLPTGDLQ 202
Query: 1188 AVLRESD 1194
+ + +D
Sbjct: 203 TIKKLAD 209
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,331,655
Number of Sequences: 37544
Number of extensions: 1720659
Number of successful extensions: 4072
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4045
Number of HSP's gapped (non-prelim): 26
length of query: 1615
length of database: 14,793,348
effective HSP length: 92
effective length of query: 1523
effective length of database: 11,339,300
effective search space: 17269753900
effective search space used: 17269753900
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 67 (31.1 bits)
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