GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001670-TA|BGIBMGA001670-PA|IPR007087|Zinc finger,
C2H2-type, IPR008081|Cytoplasmic fragile X mental retardation protein
interacting protein, IPR010996|DNA polymerase beta, N-terminal-like
         (1615 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    67   9e-13
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    37   0.001
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    37   0.002
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      29   0.23 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   2.9  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   6.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 67.3 bits (157), Expect = 9e-13
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 35/205 (17%)

Query: 208 YICNYCNKKFVDRVFFKVHIKLH---------CDVCGLLFSSKLKYLQHRHKACRIQKKH 258
           Y C  C K F  +  ++ H++ H         C++CG  F+   +  +H ++    +K +
Sbjct: 62  YQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRH-YRTHTGEKPY 120

Query: 259 QCRICNESYFRYMDLKDHSLEHLR-LCYVCDVCKEQFDTKGAMAHHLKFLHSGRRP---- 313
           QC  C++S+    +L  H   H +   Y CDVC+  F+  G +  H++ +H+G RP    
Sbjct: 121 QCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMR-IHTGERPHKCT 179

Query: 314 ---RTLYK----ILNIGT---ERLYLCRFCDESSVDKRLIEKHTQLLPDLSNRAMTGYRD 363
              +T  +    ++++ T   E+ Y+C+ C +     + ++ HT        R  TG + 
Sbjct: 180 VCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHT--------RTHTGEKP 231

Query: 364 FYFCDQCMRKFSTETDMLQHKWTHF 388
            Y CD C + F     +  H+  H+
Sbjct: 232 -YTCDICGKSFGYNHVLKLHQVAHY 255



 Score = 66.1 bits (154), Expect = 2e-12
 Identities = 65/284 (22%), Positives = 117/284 (41%), Gaps = 43/284 (15%)

Query: 109 KQVDDTSSSDTENEM--VDPKMAVKCNICEKSYP--------TEKKLLKHQDKKH--MIV 156
           KQ+ ++++   +NE+  V+P   VK  +C             +E  L   ++K +  ++ 
Sbjct: 8   KQITNSTTMSVKNEISTVEPVDPVKSLVCSPDLSVFTSPACGSETPLTNIEEKTYQCLLC 67

Query: 157 YERPKKRVSFSDHVIVH--EVKEYHKCRKCPKIFKEYXXXXXXXXXXXXXXXCYICNYCN 214
            +   ++  +  H+  H  E ++ ++C  C K F                   Y C YC+
Sbjct: 68  QKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFA-VPARLTRHYRTHTGEKPYQCEYCS 126

Query: 215 KKFVDRVFFKVHIKLH-------CDVCGLLFSSKLKYLQHRHKACRI-QKKHQCRICNES 266
           K F  +    VH ++H       CDVC   F    K   HRH      ++ H+C +C+++
Sbjct: 127 KSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKL--HRHMRIHTGERPHKCTVCSKT 184

Query: 267 YFRYMDLKDHSLEHL-RLCYVCDVCKEQFDTKGAMAHHLKFLHSGRRPRT---------- 315
           + +   L  H   H     YVC  C + F     +  H +  H+G +P T          
Sbjct: 185 FIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTR-THTGEKPYTCDICGKSFGY 243

Query: 316 -----LYKILNIGTERLYLCRFCDESSVDKRLIEKHTQLLPDLS 354
                L+++ + G E++Y C  C E+   K+ +E H +   D S
Sbjct: 244 NHVLKLHQVAHYG-EKVYKCTLCHETFGSKKTMELHIKTHSDSS 286



 Score = 28.3 bits (60), Expect = 0.54
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 325 ERLYLCRFCDESSVDKRLIEKHTQLLPDLSNRAMTGYRDFYFCDQCMRKFSTETDMLQHK 384
           E+ Y C  C ++   K L + H      L +    G  D Y C+ C + F+    + +H 
Sbjct: 59  EKTYQCLLCQKAFDQKNLYQSH------LRSHGKEG-EDPYRCNICGKTFAVPARLTRHY 111

Query: 385 WTH 387
            TH
Sbjct: 112 RTH 114


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 254 IQKKHQCRICNESYFRYMDLKDH---SLEHLRLCYVCDVCKEQFDTKGAMAHHLKFLHSG 310
           I +  +C  C  ++  Y  LK H     E     YVC+ C  ++ TK ++  H    H G
Sbjct: 2   INEPQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRG 61



 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 175 VKEYHKCRKCPKIFK-EYXXXXXXXXXXXXXXXCYICNYCNKKFVDRVFFKVHIKL-HCD 232
           + E  +C  C + F   Y                Y+C +CN+++  +     H  L H  
Sbjct: 2   INEPQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRG 61

Query: 233 VCGLL 237
             G+L
Sbjct: 62  SSGML 66


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 208 YICNYCNKKFVDRVFFKVHIKLH-----CDVCGLLFSSKLKYLQHRHKACRIQKKHQCRI 262
           + C YC K +V     K+HI+ H     C +CG  F S+   LQ   +    +K   C+ 
Sbjct: 17  FSCKYCEKVYVSLGALKMHIRTHTLPCKCHLCGKAF-SRPWLLQGHIRTHTGEKPFSCQH 75

Query: 263 CNESY 267
           CN ++
Sbjct: 76  CNRAF 80


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 231 CDVCGLLFSSKLKYLQHRHKA-CRIQKKHQCRICNESYFRYMDLKDH-SLEHLR 282
           CDVCG   S+KL   +H+ +   +      C +C++ +     L +H S+ H R
Sbjct: 374 CDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYHRR 427



 Score = 28.3 bits (60), Expect = 0.54
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 283 LCYVCDVCKEQFDTKGAMAHHLKFLH 308
           +CY CDVC +   TK  +  H +  H
Sbjct: 370 VCYTCDVCGKTLSTKLTLKRHKEQQH 395



 Score = 27.9 bits (59), Expect = 0.71
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 116 SSDTENEMVDPKMAVKCNICEKSYPTEKKLLKHQDKKH 153
           S      ++ P +   C++C K+  T+  L +H++++H
Sbjct: 358 SHPLHGNLLPPGVCYTCDVCGKTLSTKLTLKRHKEQQH 395


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 1048 FKKQFLYDEVEAEVNLCFDQFVYK 1071
            FKK ++ D ++AE +  +D  VY+
Sbjct: 1042 FKKTYVQDLIQAEASQIYDMLVYE 1065


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 7/23 (30%), Positives = 16/23 (69%)

Query: 208 YICNYCNKKFVDRVFFKVHIKLH 230
           Y C++C+++FV     + H+++H
Sbjct: 38  YHCSHCDRQFVQVANLRRHLRVH 60


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 1372 FCMLIEQALSQEEVTDLLHAAPFQNILPRPYSTDGDK 1408
            F + +E A + EE+ +L+      + LP P++ D ++
Sbjct: 1079 FRLNVETAKTNEEMWELIDTEKLTDRLPYPWTMDNER 1115


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,596
Number of Sequences: 429
Number of extensions: 18323
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 23
length of query: 1615
length of database: 140,377
effective HSP length: 67
effective length of query: 1548
effective length of database: 111,634
effective search space: 172809432
effective search space used: 172809432
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)