Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001669-TA|BGIBMGA001669-PA|IPR001993|Mitochondrial
substrate carrier
(326 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 135 4e-32
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 48 1e-05
SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 42 5e-04
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 42 7e-04
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_11007| Best HMM Match : Mito_carr (HMM E-Value=0.0072) 38 0.011
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.015
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.015
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.026
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.42
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.42
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.42
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.56
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.56
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 32 0.56
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 32 0.74
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.97
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_30293| Best HMM Match : Rho_N (HMM E-Value=0.0017) 31 1.7
SB_20455| Best HMM Match : Endonuclease_7 (HMM E-Value=0.55) 31 1.7
SB_17800| Best HMM Match : Endonuclease_7 (HMM E-Value=0.032) 31 1.7
SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 31 1.7
SB_49325| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0028) 31 1.7
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_11295| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 30 2.2
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75) 29 3.9
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3) 29 3.9
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 29 5.2
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09) 29 5.2
SB_56692| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1e-04) 29 6.9
SB_17975| Best HMM Match : Rho_N (HMM E-Value=0.0017) 29 6.9
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_14642| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 28 9.1
SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26) 28 9.1
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 135 bits (327), Expect = 4e-32
Identities = 80/204 (39%), Positives = 111/204 (54%), Gaps = 23/204 (11%)
Query: 61 LNKGVTDAFTKIYASEGVSGLYRGFWLS--SIISGVFYISTYEGVRFELGKYDISPKWKS 118
L G DAFTK+ +EGV GLY+G+ +S + +G YI+TYE VR + +Y+ + +
Sbjct: 51 LYNGSLDAFTKVIRTEGVRGLYKGYLVSCAGLFAGQCYITTYELVRSKTAQYNYTIR--G 108
Query: 119 FIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAALAR 178
F+ GGCASIVGQTI VP D++SQ LM+ G +G R+ K AR
Sbjct: 109 FLAGGCASIVGQTITVPVDIISQKLMIQG--QG-----------------DRKVKLKGAR 149
Query: 179 EVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVWVSHLLIQCV 238
+ + QHGP G+Y+GY ASL Y P+SA+WWA Y Y + +S LL+
Sbjct: 150 ILIRETFHQHGPGGFYKGYFASLMTYAPSSAIWWASYGFYTGVIGNLSADGTHRLLVLGS 209
Query: 239 AXXXXXXXXXXXXNPLDIVRARLQ 262
+ NPLD++R RLQ
Sbjct: 210 SGVLAGVTAATLTNPLDVIRTRLQ 233
Score = 28.7 bits (61), Expect = 6.9
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 183 RVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVWVSHLLIQCVAXXX 242
+V R G G Y+GY S A T Y EL++ ++ + +A
Sbjct: 61 KVIRTEGVRGLYKGYLVSCAGLFAGQ----CYITTY--ELVRSKTAQYNYTIRGFLAGGC 114
Query: 243 XXXXXXXXXNPLDIVRARLQVEGVGTMKQVFK 274
P+DI+ +L ++G G K K
Sbjct: 115 ASIVGQTITVPVDIISQKLMIQGQGDRKVKLK 146
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 47.6 bits (108), Expect = 1e-05
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 8/160 (5%)
Query: 166 DLDKRRSKAALAREVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKI 225
D+ + R L R RVYR+ G G YRG +L S+ Y ++ LL
Sbjct: 48 DIFRERYYKGLIRTGLSRVYREEGVRGLYRGIFPALLRQAIYSSTRLGAYEPIKN-LLGA 106
Query: 226 SPVWVSHLLIQCVAXXXXXXXXXXXXNPLDIVRARLQVEGVG------TMKQVFKQLWAE 279
+ + L + VA P D+V+ R Q +G M F ++ +
Sbjct: 107 TDSTSAALWKKIVAGVSSGVIGSAIATPTDLVKIRFQAVKIGETIPYKNMFHAFYKIAKK 166
Query: 280 EGLFGLYAKGLSARLVQSACFSFSIILGYESIKRMAISDE 319
EG GL+ G+ + ++AC S + I Y+ K + ++ E
Sbjct: 167 EGFLGLWT-GMKPTVKRAACISGTQIPTYDHTKHLLLNAE 205
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 59 ERLNKG-VTDAFTKIYASEGVSGLYRGFWLSSIISGVFYIST----YEGVRFELGKYDIS 113
ER KG + +++Y EGV GLYRG + +++ Y ST YE ++ LG D +
Sbjct: 52 ERYYKGLIRTGLSRVYREEGVRGLYRGIF-PALLRQAIYSSTRLGAYEPIKNLLGATDST 110
Query: 114 PK--WKSFIGGGCASIVGQTIIVPFDVL 139
WK + G + ++G I P D++
Sbjct: 111 SAALWKKIVAGVSSGVIGSAIATPTDLV 138
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 18/92 (19%)
Query: 252 NPLDIVRARLQVEG-VGT---MKQVFKQ-------------LWAEEGLFGLYAKGLSARL 294
NP+++V+ R+Q++ +G+ K +F++ ++ EEG+ GLY +G+ L
Sbjct: 25 NPIEVVKIRMQLDNELGSKHNSKDIFRERYYKGLIRTGLSRVYREEGVRGLY-RGIFPAL 83
Query: 295 VQSACFSFSIILGYESIKRMAISDEYRPRVRW 326
++ A +S + + YE IK + + + W
Sbjct: 84 LRQAIYSSTRLGAYEPIKNLLGATDSTSAALW 115
>SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 46.0 bits (104), Expect = 4e-05
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 11/207 (5%)
Query: 120 IGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAALARE 179
+ GG G + P DV+ L R + +N GI+ SK
Sbjct: 731 VAGGLGGSTGVILTCPLDVIQTRLQSSAFRLQRISQLG--LNMAGIEATSSVSKPTNFYG 788
Query: 180 V---AVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVWVSHLLIQ 236
V + R G ++G +L A P+ A+++ Y ++ L + + ++
Sbjct: 789 VFSYGRYIARTEGARSLFKGLCPNLLAVTPSRAIYFTTYQKLKEWLNNGGILAANSSMVY 848
Query: 237 CVAXXXXXXXXXXXXNPLDIVRARLQVE-GVG---TMKQVFKQLWAEEGLFGLYAKGLSA 292
V+ NPL ++ RLQ++ G + +V +Q +A EG+ Y KGLSA
Sbjct: 849 LVSGASAQIVNSTITNPLWFLKTRLQLDFKCGREVKLARVVRQAYATEGIRAFY-KGLSA 907
Query: 293 RLVQSACFSFSIILGYESIKRMAISDE 319
+ S + YE++K+ + +
Sbjct: 908 SYLGSIEVGLHFAI-YENLKQQLLRSQ 933
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 45.2 bits (102), Expect = 7e-05
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Query: 57 GGERLNKGVTDAFTKIYASEGVSGLYRGFWLSS---IISGVFYISTYEGVRFELGKYDIS 113
GGER G+ D + K AS+G+ GLYRGF +S I+ FY Y+ ++ L D
Sbjct: 151 GGERQFNGMIDVYKKTIASDGLVGLYRGFVISCVGIIVYRGFYFGLYDTLKPILLGEDAG 210
Query: 114 PKWKSFIGGGCASIVGQTIIVPFDVLSQHLMVL-GLVKGRTGGVSTTINPLGIDLDKRRS 172
SF+ G ++ P D + + +M+ G G + TI L K+
Sbjct: 211 VV-ISFVLGYGVTVSAGLASYPIDTIRRRMMMTSGEAVKYKGSIDCTIQIL-----KKEG 264
Query: 173 KAALAREVAVRVYRQHGPLGYYRGYTASLAAYV 205
+L + + R G G+ YV
Sbjct: 265 AMSLMKGAGANILRGMAGAGVLAGFDKFKELYV 297
Score = 28.7 bits (61), Expect = 6.9
Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 11/144 (7%)
Query: 179 EVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVWVSHLLIQCV 238
+V + G +G YRG+ S + ++ LY + LL + ++I V
Sbjct: 161 DVYKKTIASDGLVGLYRGFVISCVGIIVYRGFYFGLYDTLKPILLGED----AGVVISFV 216
Query: 239 AXXXXXXXXXXXXNPLDIVRARLQVEGVGTMK-----QVFKQLWAEEGLFGLYAKGLSAR 293
P+D +R R+ + +K Q+ +EG L KG A
Sbjct: 217 LGYGVTVSAGLASYPIDTIRRRMMMTSGEAVKYKGSIDCTIQILKKEGAMSL-MKGAGAN 275
Query: 294 LVQSACFSFSIILGYESIKRMAIS 317
+++ ++ G++ K + ++
Sbjct: 276 ILRGMA-GAGVLAGFDKFKELYVN 298
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 183 RVYRQHGPLGYYRGYTASLAAYVPNSALWWA 213
R YR G L ++RG A+ Y P AL +A
Sbjct: 62 RTYRSEGFLSFWRGNLANCIRYFPTQALNFA 92
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 42.3 bits (95), Expect = 5e-04
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 26/151 (17%)
Query: 64 GVTDAFTKIYASEGVSGLYRGFWLSSIISGVFYISTYEGVR--FELGKYDISPKWKS--- 118
G+ A +I+ EG+ GLY+G + S++S ++ + V +L D + S
Sbjct: 71 GIVSALRRIHIEEGIRGLYKGL-VPSLVSIAPFLGVQQSVYDIMKLRALDSAFAANSGTF 129
Query: 119 FIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAALAR 178
+ G A ++ QT++ P DV+ + + V +GR+G ++ T S +AL
Sbjct: 130 LVCGAIAGMIAQTVVHPLDVVRRQMQV---DRGRSGSITQT------------SLSALK- 173
Query: 179 EVAVRVYRQHGPLGYYRGYTASLAAYVPNSA 209
+++Q GP Y G TAS +P +A
Sbjct: 174 ----ILWKQGGPRRIYAGLTASYLKVMPAAA 200
Score = 35.5 bits (78), Expect = 0.060
Identities = 56/239 (23%), Positives = 99/239 (41%), Gaps = 28/239 (11%)
Query: 91 ISGVFYISTYEGVRFELGKYDISPKWKSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVK 150
IS + Y + + + K P W+ F+ G A +V P DV+ L V +
Sbjct: 5 ISNLGYSLSLQYTPVDNDKNPHQPLWR-FVSGATAGVVATASTHPLDVVRARLTVQDM-- 61
Query: 151 GRTGGVSTTINPLGIDLDKRRSKAALAREVAVRVYRQHGPLGYYRGYTASLAAYVPNSAL 210
T +S N GI +AL R ++ + G G Y+G SL + P +
Sbjct: 62 -STRSIS---NYTGI-------VSALRR-----IHIEEGIRGLYKGLVPSLVSIAPFLGV 105
Query: 211 WWALYTAYQDELLKISPVWVSHLLIQCVAXXXXXXXXXXXXNPLDIVRARLQVE--GVGT 268
++Y + L + S + C A +PLD+VR ++QV+ G+
Sbjct: 106 QQSVYDIMKLRALDSAFAANSGTFLVCGAIAGMIAQTVV--HPLDVVRRQMQVDRGRSGS 163
Query: 269 MKQ----VFKQLWAEEGLFGLYAKGLSARLVQSACFSFSIILGYESIKRMAISDEYRPR 323
+ Q K LW + G +YA GL+A ++ + + +L +++ R+ ++ R
Sbjct: 164 ITQTSLSALKILWKQGGPRRIYA-GLTASYLKVMPAAATSLLVRDALARVEAREKAAER 221
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 41.9 bits (94), Expect = 7e-04
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Query: 186 RQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVW-VSHLLIQCVAXXXXX 244
+ G ++G +L P+ A+++A+Y+ +D L K + LI +
Sbjct: 786 KNEGIQSLFKGLGTTLLGVTPSRAIYFAIYSKLKDMLNKSGALGKADGSLIHMTSSAIAA 845
Query: 245 XXXXXXXNPLDIVRARLQVEGV-GTMKQVFK---QLWAEEGLFGLYAKGLSARLV--QSA 298
NPL ++ RLQ+E GT FK + EG+ Y +GL+A V
Sbjct: 846 FINHTVTNPLWFIKTRLQLENQGGTRASAFKIVSMAYKAEGIRAFY-RGLTASYVGISET 904
Query: 299 CFSFSIILGYESIKRMAISDEYRPR 323
F+I YE +K + Y+ R
Sbjct: 905 VVHFTI---YERLKAELLKLHYKSR 926
Score = 35.9 bits (79), Expect = 0.045
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 165 IDLDKRRSKAALAREVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLK 224
+ L+ + A A ++ Y+ G +YRG TAS + + + + +Y + ELLK
Sbjct: 862 LQLENQGGTRASAFKIVSMAYKAEGIRAFYRGLTASYVG-ISETVVHFTIYERLKAELLK 920
Query: 225 IS-PVWVSHLLIQC-VAXXXXXXXXXXXXNPLDIVRARL---QVEGVGTMK-----QVFK 274
+ +++C +A P ++ R RL + E +G K Q
Sbjct: 921 LHYKSRRDFHVVECMLAAGISKCIATSLCYPHEVARTRLRQQESEFLGRQKYRSFFQTLG 980
Query: 275 QLWAEEGLFGLYAKGLSARLVQSACFSFSIILGYESI 311
+ EEG GLY GL +++ + + YE +
Sbjct: 981 TVLREEGWRGLYG-GLGTHVIRQVPNTAIMFFTYEGV 1016
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 39.9 bits (89), Expect = 0.003
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 12/139 (8%)
Query: 184 VYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVWVSH--LLIQCVAXX 241
+Y++ G +YRG SL +P + + A+Y ++ L + +L+
Sbjct: 276 IYQKEGIRSFYRGLFPSLLGIIPYAGIDLAVYETLKNFYLNYHKNQSADPGVLVLLACGT 335
Query: 242 XXXXXXXXXXNPLDIVRARLQVE------GVG-TMKQVFKQLWAEEGLFGLYAKGLSARL 294
PL +VR RLQ + G G M V +++ E+G GLY +GL+
Sbjct: 336 ASSTCGQLASYPLSLVRTRLQAQAREKGGGQGDNMVSVLRKIITEDGFKGLY-RGLAPNF 394
Query: 295 VQSA-CFSFSIILGYESIK 312
++ A S S ++ YE+++
Sbjct: 395 LKVAPAVSISYVV-YENLR 412
>SB_11007| Best HMM Match : Mito_carr (HMM E-Value=0.0072)
Length = 60
Score = 37.9 bits (84), Expect = 0.011
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 263 VEGVGTMKQVFKQLWAEEGLFGLYAKGLSARLVQSACFSFSIILGYESIKRMAISD 318
VEG ++ Q FK L EG L KG+ ++ S +I+GYE++K++++ +
Sbjct: 1 VEGGKSLTQAFKSLLRNEGALAL-TKGMLPSVISEVPTSMVMIIGYETLKKLSLKE 55
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 37.5 bits (83), Expect = 0.015
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 21/164 (12%)
Query: 63 KGVTDAFTKIYASEGVSGLYRGFWLS---SIISGVFYISTYEGVR---FELGKYDISPKW 116
+GV T ++ EG+ YR + +I + + YE R LG YD PK
Sbjct: 33 RGVIHCATSVFKEEGIRAFYRSYTTQLSMNIPFQTLHFTVYEYARKALNPLGGYD--PK- 89
Query: 117 KSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAAL 176
I G A V I P DV L+ + V +N +G K
Sbjct: 90 THVIAGATAGAVASAITTPLDVAKT------LLNTQERSV---VNLVG--TPKGHVYYVS 138
Query: 177 AREVAVR-VYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQ 219
A R +Y+ G GY++G A + +P+ A+ W++Y ++
Sbjct: 139 GMFTAFRTIYQMRGFPGYFQGLQARVIFQMPSCAICWSVYEFFK 182
Score = 32.7 bits (71), Expect = 0.42
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 181 AVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVWVSHLLIQCVAX 240
A V+++ G +YR YT L+ +P L +T Y+ ++P+ +A
Sbjct: 39 ATSVFKEEGIRAFYRSYTTQLSMNIPFQTLH---FTVYEYARKALNPLGGYDPKTHVIAG 95
Query: 241 XXXXXXXXXXXNPLDIVRARLQVE 264
PLD+ + L +
Sbjct: 96 ATAGAVASAITTPLDVAKTLLNTQ 119
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 37.5 bits (83), Expect = 0.015
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 184 VYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVWVSHLLIQCVAXXXX 243
+YR G L Y++G A + P A+ + Y Y L SP + + VA
Sbjct: 20 IYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKVLQTSSPA-----INKLVAGSLA 74
Query: 244 XXXXXXXXNPLDIVRARL-----QVEGVGTMKQVFKQLWAEEG 281
PLD+VR+RL Q +G T+ Q + + +EG
Sbjct: 75 GMTACACTYPLDMVRSRLAFQVAQDQGYTTITQTIRCISVKEG 117
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 119 FIGGGCASIVGQTIIVPFDVLSQHLMVLGLV 149
F+ GG A V QTI P DV+ + + + G V
Sbjct: 176 FVCGGVAGAVSQTIAYPLDVVRRRMQLAGAV 206
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 36.7 bits (81), Expect = 0.026
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 253 PLDIVRARLQVEGVG--TMKQVFKQLWAEEGLFGLYAKGLSARLVQSACFSFSIILGYES 310
P+ +V+ R + +M+Q +W EG GLY+ GL A + + A FS ++ Y
Sbjct: 449 PVTVVKTRYESGNFNYTSMRQALVSIWTNEGGRGLYS-GLVATVARDAPFSGLYLMFYTQ 507
Query: 311 IKRMA 315
IKR A
Sbjct: 508 IKRRA 512
Score = 34.3 bits (75), Expect = 0.14
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 3/138 (2%)
Query: 178 REVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVWVSHLLIQC 237
R+ V ++ G G Y G A++A P S L+ YT + + V
Sbjct: 468 RQALVSIWTNEGGRGLYSGLVATVARDAPFSGLYLMFYTQIKRRAKGLLQVGDLTSGQNF 527
Query: 238 VAXXXXXXXXXXXXNPLDIVRARLQVEG--VGTMKQVFKQLWAEEGLFGLYAKGLSARLV 295
+ P D+V+ RLQ+ + + + G+ GL+ +GL R V
Sbjct: 528 ICGIMAGAMASVVTQPADVVKTRLQMNPYMYPSNRAAVVAIIEAGGIEGLF-RGLVPRTV 586
Query: 296 QSACFSFSIILGYESIKR 313
+ S YE + R
Sbjct: 587 RRTLMSAMAWTIYEEVSR 604
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 32.7 bits (71), Expect = 0.42
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 49 LYTMSSFTGGER-LNKGVTDAFTKIYASEGVSGLYRGFWLSSIISGVFYISTYEGVRFEL 107
L TM GE+ + G D K +EG GLY+G +++ I+GV I F +
Sbjct: 54 LQTMPRPKPGEKPMFTGTFDCAMKTIRNEGFFGLYKG--MAAPITGVTPIFAICFWGFNM 111
Query: 108 GKY------DISPKWKSFIGGGC-ASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTI 160
GK + P + + G A + I+ P + + L +L L K +T + +
Sbjct: 112 GKKLQMKDPNADPTYLQIMNAGAFAGVCTTAIMAPGERIKCLLQILALQKAKTEFPNIVL 171
Query: 161 NPLGIDLD 168
+ + +D+D
Sbjct: 172 SIVYVDVD 179
Score = 31.5 bits (68), Expect = 0.97
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 56 TGGERLNKGVTDAFTKIYASEGVSGLYRGF---WLSSIISGVFYISTYE 101
+G E+ KG D +IYA G+ G+Y+G L + Y +YE
Sbjct: 225 SGAEKKYKGPIDCARQIYAQNGIRGVYKGVCATLLRDVPGTAMYFLSYE 273
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 179 EVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALY 215
+ A ++Y Q+G G Y+G A+L VP +A+++ Y
Sbjct: 236 DCARQIYAQNGIRGVYKGVCATLLRDVPGTAMYFLSY 272
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 32.7 bits (71), Expect = 0.42
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 13/206 (6%)
Query: 64 GVTDAFTKIYASEGVSGLYRGFWLSSIISGVFYIST-YEGVRFE-LGKYDISPKWKSFIG 121
GV D F +I E V GLY+G ++S ++G+ I+ GV+ E L + + S I
Sbjct: 193 GVFDCFKQIIKRESVLGLYKG--MASPLAGLGLINAIIFGVQGETLRRLNGSGTMAQAIS 250
Query: 122 GGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAALAREVA 181
G A V + P ++ + V G + T + + ++ + +
Sbjct: 251 GAIAGGVQSIVCCPMELAKTRVQVQGQGQKLVHVFFLT------NTETKQMAYTGSLDCL 304
Query: 182 VRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVWVSHL--LIQCVA 239
+V+ G G +RG + +P AL++ + Y ELL V +L + +
Sbjct: 305 KKVFHSEGLRGCFRGMAITTTRDIPAFALYFGSF-QYVCELLTPKGEHVDNLSPIRLFFS 363
Query: 240 XXXXXXXXXXXXNPLDIVRARLQVEG 265
P+D+V++ Q +G
Sbjct: 364 GGIAGTLSWILTYPVDMVKSCYQADG 389
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 32.7 bits (71), Expect = 0.42
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 63 KGVTDAFTKIYASEGVSGLYRGFWLSSI--ISG-VFYISTYEGVRFELGKYDISPKWKSF 119
+G D K+Y S G++G ++G ++++ I G Y YE + S ++
Sbjct: 76 RGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGFAVYFGVYELLCDWFSNLFGSRGVATY 135
Query: 120 I-GGGCASIVGQTIIVPFDVLSQHLMVLG 147
+ GG A +V PFDV+ + G
Sbjct: 136 LMAGGFAGVVSWASTFPFDVIKSRIQADG 164
Score = 32.3 bits (70), Expect = 0.56
Identities = 29/143 (20%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 163 LGIDLDKRRSKAALAR---EVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQ 219
L + + +RS ++ R + V++YR G G ++G T + +P A+++ +Y
Sbjct: 61 LQMQTEAKRSTRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGFAVYFGVYELLC 120
Query: 220 DELLKISPVWVSHLLIQCVAXXXXXXXXXXXXNPLDIVRARLQVEG-VGT-----MKQVF 273
D + + +A P D++++R+Q +G +G M
Sbjct: 121 DWFSNL--FGSRGVATYLMAGGFAGVVSWASTFPFDVIKSRIQADGNLGKFRYKGMMDCA 178
Query: 274 KQLWAEEGLFGLYAKGLSARLVQ 296
Q + EEG+ ++ +G+ L++
Sbjct: 179 LQSYKEEGMI-VFTRGIWPTLLR 200
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 32.3 bits (70), Expect = 0.56
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 177 AREVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVWVSHLLIQ 236
A + ++ R G G Y+G + L P++AL Y+ + +++S + L+Q
Sbjct: 65 AMDCFMKTVRLEGLRGLYKGMLSPLLMATPSTAL--TFYSLSVGKRIQLSDPYQEPTLVQ 122
Query: 237 CV-AXXXXXXXXXXXXNPLDIVRARLQVE-GVGTMKQ-----VFKQLWAEEGLFGLYAKG 289
A P + ++ LQVE G Q + K+++AEEG+ G++ +G
Sbjct: 123 YGNAGLFCGFCVSFLFAPAERIKCILQVEAGASGSTQSGPYAIVKRIYAEEGVRGIF-RG 181
Query: 290 LSARLVQSACFSFSIILGYESIKRMAISD 318
L +++ + L YE + + S+
Sbjct: 182 LPPTMIRDTFGTGVWYLTYEGLLMLMRSE 210
Score = 32.3 bits (70), Expect = 0.56
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 71 KIYASEGVSGLYRGFWLSSII----SGVFYISTYEG----VRFELGKYDISPKWKSFIGG 122
+IYA EGV G++RG + I +GV+Y+ TYEG +R E D + G
Sbjct: 168 RIYAEEGVRGIFRGLPPTMIRDTFGTGVWYL-TYEGLLMLMRSEGTSRDDIGTLQIVSAG 226
Query: 123 GCASIVGQTIIVPFDVLSQHLMV 145
G A + ++ P D+L + +
Sbjct: 227 GIAGLALWGLMFPVDMLKTRVQI 249
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 32.3 bits (70), Expect = 0.56
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 183 RVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELLKISPVWVSHLLIQCVAXXX 242
++ R G +RG T + +PN+ + ++ + + L +S LL A
Sbjct: 89 KIIRNEGVYYLFRGVTVPILNSIPNTTVLFSCVSFVKSYKLPVSK--DPELLRSLAAGMI 146
Query: 243 XXXXXXXXXNPLDIVRARLQVE------GVGTMKQVFKQLWAEEGLFGLYAKGLS 291
PLD V+ LQ+E G ++++ E G+ G+Y KG+S
Sbjct: 147 AGVATSFVLTPLDRVKCILQIEKAFGGSSYGGPVDCLRRIYREAGVRGVY-KGIS 200
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 32.3 bits (70), Expect = 0.56
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 268 TMKQVFKQLWAEEGLFGLYAKGLSARLVQSACFSFSIILGYESIKRMAISDEYR 321
+M F+ ++ +EG+FG Y +G A L+Q C + +IL + + +S +++
Sbjct: 329 SMLDCFRTIYQQEGIFGFY-RGFGALLIQ--CVVYFVILKITKVVYVRLSQDFQ 379
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 67 DAFTKIYASEGVSGLYRGFWLSSIISGVFYI 97
D F IY EG+ G YRGF I V+++
Sbjct: 332 DCFRTIYQQEGIFGFYRGFGALLIQCVVYFV 362
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 32.3 bits (70), Expect = 0.56
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 110 YDISPKWKSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRT--GGVSTTINPLGIDL 167
+D+ P+ + FI ++G+ DV+S+ V+GLVKGR+ + + I+ L + L
Sbjct: 1129 FDLPPRVEQFIA---IRLIGKNASA--DVVSEFPKVMGLVKGRSTQANIVSAIDTLDVTL 1183
Query: 168 DKRRSKAALA 177
K ALA
Sbjct: 1184 SAGAEKTALA 1193
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 31.9 bits (69), Expect = 0.74
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 129 GQTIIVPFDVLSQHL-MVLGLVKGRTG-GVSTTINPLGIDLDKRRSKAALAREVAVRVYR 186
GQ I +L HL M+ G G V+T + L I + A A + V
Sbjct: 96 GQRIYKNLHILPLHLEMIAGAAAGCCQVAVTTPMEMLKIQMQMAGRHATTATANSSLVGS 155
Query: 187 QHGPLGYY-RGY-TASLAAY--VPNSALWWALYTAYQDELLKISPVWVSHLLIQCV-AXX 241
+ R Y TAS+A +P S +++ L+ AY + L I LI C+ A
Sbjct: 156 SSSTKAHISRSYGTASVAVPRDIPFSCIYFPLF-AYLN-LKSIDMHGGKPPLIYCLGAGC 213
Query: 242 XXXXXXXXXXNPLDIVRARLQV----EGVGTMKQVF---KQLWAEEGLFGLYAKGLSARL 294
NPLD+++ RLQ+ +G + K++++ EGL Y KG R+
Sbjct: 214 LAGMTASVAVNPLDVIKTRLQLLNRPQGEPNYNGIIDCAKKIYSNEGLAAFY-KGAVPRM 272
Query: 295 V 295
+
Sbjct: 273 I 273
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 58 GERLNKGVTDAFTKIYASEGVSGLYRG 84
GE G+ D KIY++EG++ Y+G
Sbjct: 241 GEPNYNGIIDCAKKIYSNEGLAAFYKG 267
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 31.5 bits (68), Expect = 0.97
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 189 GPLGYYRGYTASLAAYVPNSALWWALYTAYQD-------ELLKISPVWVSHLLIQ---CV 238
G + YRG+T + + +P + + + +++D L +I P +L +
Sbjct: 52 GMVALYRGFTPTSLSMIPAVGIGFYAFESFKDFFVAMKGVLTRIHPETGETVLTAPGGLL 111
Query: 239 AXXXXXXXXXXXXNPLDIVRARLQVEGV-------GTMKQVFKQLWAEEGL-FGLYAKGL 290
PLD+VR R+Q+ G T F ++ E+G+ GLY +GL
Sbjct: 112 CGALAGATSQTLAYPLDVVRRRMQLAGTVADGHKYSTCINTFISVYTEDGIRRGLY-RGL 170
Query: 291 SARLVQSACFSFSIILG-YESIKRMAISDE 319
S ++ C +++ YE +K++ E
Sbjct: 171 SINYLR-VCPQVAVMFAVYEVVKQLLTKAE 199
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 148 LVKGRTGGVS-TTINPLG-----IDLDKRRSKAALAREVAVRVYRQHGPLGYYRGYTASL 201
L G G VS T+++PL + + + K +++ ++ G LGY++G ++
Sbjct: 39 LAGGIAGAVSRTSVSPLERVKILLQIQVKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNV 98
Query: 202 AAYVPNSALWWALYTAYQ 219
P SA+ +A Y Y+
Sbjct: 99 IRIFPYSAVQFAAYEEYK 116
>SB_30293| Best HMM Match : Rho_N (HMM E-Value=0.0017)
Length = 1078
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 107 LGKYDISPKWKSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLG 164
L YD+ P W G +T V ++L+ + M+L + KG GGVS N G
Sbjct: 600 LKNYDLDPAWYYTAPGLAWDAALKTTKVRLELLTDYDMLLMIEKGIRGGVSMISNRHG 657
>SB_20455| Best HMM Match : Endonuclease_7 (HMM E-Value=0.55)
Length = 349
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 107 LGKYDISPKWKSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLG 164
L YD+ P W G +T V ++L+ + M+L + KG GGVS N G
Sbjct: 241 LKNYDLDPAWYYTAPGLAWDAALKTTKVRLELLTDYDMLLMIEKGIRGGVSMISNRHG 298
>SB_17800| Best HMM Match : Endonuclease_7 (HMM E-Value=0.032)
Length = 644
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 107 LGKYDISPKWKSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLG 164
L YD+ P W G +T V ++L+ + M+L + KG GGVS N G
Sbjct: 536 LKNYDLDPAWYYTAPGLAWDAALKTTKVRLELLTDYDMLLMIEKGIRGGVSMISNRHG 593
>SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 55 FTGGERLNKGVTDAFTKIYASEGVSGLYRGFWLSSIISGVFYISTYEGVRFELGKY 110
F G E + G+T + +IY G+ G + G + I V + Y V F + K+
Sbjct: 142 FVGKEAIYTGLTSSIKEIYNEHGILGFFAGL-VPRIAGEVLSLWMYRSVVFIINKF 196
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 183 RVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQ 219
++YR G GY++G ++ VP +A+ +A Y ++
Sbjct: 600 KIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFK 636
Score = 29.9 bits (64), Expect = 3.0
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 253 PLDIVRARLQVE-GVGTMK-----QVFKQLWAEEGLFGLYAKGLSARLVQSA 298
PLD+VR R+Q+E G G K FK + EG GL+ KG+ L++ A
Sbjct: 701 PLDVVRRRMQMERGEGMFKYSSTWDGFKVIVRSEGFIGLF-KGMWPNLLKVA 751
>SB_49325| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0028)
Length = 537
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 107 LGKYDISPKWKSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLG 164
L YD+ P W G +T V ++L+ + M+L + KG GGVS N G
Sbjct: 241 LKNYDLDPAWYYTAPGLAWDAALKTTKVRLELLTDYDMLLMIEKGIRGGVSMISNRHG 298
>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 30.7 bits (66), Expect = 1.7
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 121 GGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAALAREV 180
GGGC S+ G ++ P V ++L VK R + INP + K+ A+ R
Sbjct: 338 GGGCRSLSGTSVASPV-VAGAVSLLLSAVKHR----GSAINPASV---KQALMASARRLP 389
Query: 181 AVRVYRQ-HGPLGYYRGYTASLAAYVPNSAL 210
++ Q HG L + Y L Y P ++L
Sbjct: 390 GFNIFEQGHGKLDLVKAYQI-LNNYKPQASL 419
>SB_11295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 30.7 bits (66), Expect = 1.7
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 53 SSFTGGERLNKGVTDAFTKIYASEGVSGLYRGFWLSSIISGVFYISTYEGVRFELGKYDI 112
SS E L GVT T+ + V+ L L+ + + TYEG + +LG + +
Sbjct: 232 SSIEDKESLLNGVTRGLTQKDSETSVTSLGSSLRLTLLEQALSREETYEGDKHQLGGHVV 291
Query: 113 S------PKWKSFIGGGCASIVGQTIIVPF 136
SFI C + Q II+PF
Sbjct: 292 MLLIFLISMCLSFIVFACFGLEKQLIIIPF 321
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 64 GVTDAFTKIYASEGVSGLYRGFWLSSIISGVFYISTYEGVRF 105
G+ +AFT+IY EG+ YRG+ + + I Y G+ F
Sbjct: 27 GLINAFTRIYRDEGMRTFYRGY-----VPTLIGIMPYAGISF 63
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 183 RVYRQHGPLGYYRGYTASLAAYVPNSALWWALY 215
R+YR G +YRGY +L +P + + + Y
Sbjct: 34 RIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTY 66
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 29.9 bits (64), Expect = 3.0
Identities = 29/156 (18%), Positives = 66/156 (42%), Gaps = 10/156 (6%)
Query: 165 IDLDKRRSKAALAREV--AVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDEL 222
+ LD++ +K + + + HG LG YRG ++ L VP +++ +A++ ++++
Sbjct: 68 LQLDEKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSSLLYGSVPKASVRFAVFEYLKNKM 127
Query: 223 LKISPVWVSHLLIQCVAXXXXXXXXXXXXNPLDIVRARL---QVEGVGTMKQVF---KQL 276
+ ++ P++ ++ + Q + K F + +
Sbjct: 128 ADENGK-LTQFQTLASGLGAGVSEAVVVVCPMETIKVKFIHDQTQPNPKYKGFFSGVRTI 186
Query: 277 WAEEGLFGLYAKGLSARLVQSACFSFSIILGYESIK 312
EG FG+Y KGL+A +++ Y ++K
Sbjct: 187 LKTEGFFGVY-KGLTATVIKQGSNQMIRFFVYSNLK 221
>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
Length = 1167
Score = 29.5 bits (63), Expect = 3.9
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 64 GVTDAFTKIYASEGVSGLYRGFWLSSIISGVFYISTYEGVRFELGKYDISPKWKSFIGGG 123
G+ D F IYA V+ + G +S I G +++ YDI+ KS
Sbjct: 520 GLKDVFELIYAKNAVTHMLTGKAISRAIRGHLLVNSALNAMLASKTYDITLPTKSNEVKD 579
Query: 124 CASIVGQTIIVPFDVLSQHLMVLGLVKGR 152
AS Q P D + L + +V+ R
Sbjct: 580 PASDPQQDAASPLDTVDAELQLETVVEVR 608
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 64 GVTDAFTKIYASEGVSGLYRGFWLSSIISGVFYISTYEG 102
GV D F I EG GL++G S++ G F I+ G
Sbjct: 77 GVKDCFRTILKEEGAMGLFKGLAPSTLKVGEFLITVALG 115
Score = 28.3 bits (60), Expect = 9.1
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 253 PLDIVRARLQVEG-------------VGTMKQVFKQLWAEEGLFGLYAKGLSARLVQSAC 299
P DI++ R+QV+G +K F+ + EEG GL+ KGL+ ++
Sbjct: 49 PFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLF-KGLAPSTLKVGE 107
Query: 300 FSFSIILG 307
F ++ LG
Sbjct: 108 FLITVALG 115
>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
Length = 477
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 34 TTIEWSMMDKSKFFPLYTMSSFTGGERLNKGVTDAFTKIYASEGVSGLYRGF-WLSSIIS 92
T +EW + + K P++ S N V +AS G+ GLY GF WL
Sbjct: 352 TGVEWWELTQIKPHPIFE-ESVLEMITFNDLVPPLHFSFFASTGIIGLYVGFVWLVGKFV 410
Query: 93 GVFYISTYEGVRFE 106
+F+ S + F+
Sbjct: 411 RLFFTSISYRIMFD 424
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 29.1 bits (62), Expect = 5.2
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 140 SQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAALAREVAVRVYRQHGPLGYYRGYTA 199
S+ L+V K RT G+S TI L + + + +++V R+ G +G Y
Sbjct: 1012 SETLLVWLQRKNRTHGLSATIYDLNFMIQYGGFNSTMLGDISVISDRRKG-IGEYVNMRT 1070
Query: 200 SLAAYV-PNSALWWALYTAYQDELLKISPVWVSHLLIQCV 238
+ ++ P SAL+ YT D ++ V S +QCV
Sbjct: 1071 GMPCHLHPTSALFGMGYT--PDYIVYHELVMTSKEYMQCV 1108
>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
Length = 666
Score = 29.1 bits (62), Expect = 5.2
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 80 GLYRGFWLSSIISGVFYISTYEGVRFELGKYDISPKWKSFIGGGCASIVGQTIIVPFDVL 139
GL G WL+S ++ + ++ + +E G+ + +P W+ V T IV ++
Sbjct: 131 GLIAGVWLASAVTMLPPLTGVTSMTYEAGQTNCAPNWRPEDTRDIIYAVSLTTIV--FIV 188
Query: 140 SQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAALA 177
+ LV+ + T++ L + + RS+ ALA
Sbjct: 189 PMSACIFYLVR-----IRVTLSRLHVHQSRPRSRFALA 221
>SB_56692| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1e-04)
Length = 963
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 107 LGKYDISPKWKSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLG 164
L Y + P W G +T V ++L+ + M+L + KG GGVS N G
Sbjct: 479 LKNYGLDPAWNYTAPGLAWDAALKTTKVRLELLTDYDMLLMIEKGIRGGVSMISNRHG 536
>SB_17975| Best HMM Match : Rho_N (HMM E-Value=0.0017)
Length = 1064
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 107 LGKYDISPKWKSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLG 164
L YD+ P W G +T V ++L+ + M+L + +G GGVS N G
Sbjct: 759 LKNYDLDPAWYYTAPGLAWDAALKTTKVRLELLTDYDMLLMVEEGIRGGVSMISNRHG 816
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 64 GVTDAFTKIYASEGVSGLYRGF---WLSSIISGVFYISTYEGVRFEL 107
GV D +I ++G GL+RG W + F+ YE R+ L
Sbjct: 152 GVIDVTMQIIRNDGFQGLFRGMTATWAREVPGYFFFFGGYEFSRYML 198
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 67 DAFTKIYASEGVSGLYRGF---WLSSIISGVFYISTYEGVRFELG-KYDISPKWKSFIGG 122
DA KI EG+S L+RG + ++ + V Y + Y+ ++ G K + + W + G
Sbjct: 65 DALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFTLYDQLKISYGFKNNETNLWSPMLAG 124
>SB_14642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 142 HLMVLGLVKGRTGGV-STTINPLGIDLDKRRSKAALAREVAVRV 184
HL+ +V G G TTI + +D R KAA+A AV V
Sbjct: 270 HLIAFSVVSGLADGAFRTTITIIFVDAGGSRDKAAIAYSQAVTV 313
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 59 ERLNKGVTDAFTKIYASEGVSGLYRG 84
E++ K D F K+ +EG GLYRG
Sbjct: 951 EKVYKNSIDCFFKVVRNEGPIGLYRG 976
>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
Length = 205
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 253 PLDIVRARLQVE--GVGTMKQVFKQLWAEEGLFGLYAKG 289
PLD+V+ R+QV+ G+M FK E+G+ GL A+G
Sbjct: 75 PLDLVKCRIQVDPKKYGSMVNGFKITLKEDGVRGL-ARG 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.137 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,164,005
Number of Sequences: 59808
Number of extensions: 379177
Number of successful extensions: 810
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 112
length of query: 326
length of database: 16,821,457
effective HSP length: 82
effective length of query: 244
effective length of database: 11,917,201
effective search space: 2907797044
effective search space used: 2907797044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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