GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001669-TA|BGIBMGA001669-PA|IPR001993|Mitochondrial
substrate carrier
         (326 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    45   1e-06
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    45   1e-06
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   8.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   8.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 44.8 bits (101), Expect = 1e-06
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 57  GGERLNKGVTDAFTKIYASEGVSGLYRGFWLS---SIISGVFYISTYEGVRFELGKYDIS 113
           GGER   G+ +  TKI+ ++G++GLYRGF +S    II    Y   Y+  R  L     +
Sbjct: 151 GGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKT 210

Query: 114 PKWKSFIGGGCASIVGQTIIVPFDVLSQHLMV 145
           P   S+      + V   +  PFD + + +M+
Sbjct: 211 PFLISWGIAQVVTTVAGIVSYPFDTVRRRMMM 242



 Score = 35.1 bits (77), Expect = 8e-04
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 19/151 (12%)

Query: 117 KSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAAL 176
           K F+ GG A+ + +T + P + +   L V  + K  +              +++R K  +
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQIS--------------EEQRYKGMI 57

Query: 177 AREVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELL---KISPVWVSHL 233
             +  VR+ ++ G L Y+RG  A++  Y P  AL +A    Y+   L     +  ++ + 
Sbjct: 58  --DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYF 115

Query: 234 LIQCVAXXXXXXXXXXXXNPLDIVRARLQVE 264
           +    +             PLD  R RL  +
Sbjct: 116 VGNLASGGAAGATSLCFVYPLDFARTRLAAD 146



 Score = 25.4 bits (53), Expect = 0.68
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 183 RVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDEL--LKISPVWVSHLLIQCVAX 240
           ++++  G  G YRG+  S+   +   A ++  Y   +  L   K +P  +S  + Q V  
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224

Query: 241 XXXXXXXXXXXNPLDIVRARLQVE 264
                       P D VR R+ ++
Sbjct: 225 VAGIVSY-----PFDTVRRRMMMQ 243


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 44.8 bits (101), Expect = 1e-06
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 57  GGERLNKGVTDAFTKIYASEGVSGLYRGFWLS---SIISGVFYISTYEGVRFELGKYDIS 113
           GGER   G+ +  TKI+ ++G++GLYRGF +S    II    Y   Y+  R  L     +
Sbjct: 151 GGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKT 210

Query: 114 PKWKSFIGGGCASIVGQTIIVPFDVLSQHLMV 145
           P   S+      + V   +  PFD + + +M+
Sbjct: 211 PFLISWGIAQVVTTVAGIVSYPFDTVRRRMMM 242



 Score = 35.1 bits (77), Expect = 8e-04
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 19/151 (12%)

Query: 117 KSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAAL 176
           K F+ GG A+ + +T + P + +   L V  + K  +              +++R K  +
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQIS--------------EEQRYKGMI 57

Query: 177 AREVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELL---KISPVWVSHL 233
             +  VR+ ++ G L Y+RG  A++  Y P  AL +A    Y+   L     +  ++ + 
Sbjct: 58  --DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYF 115

Query: 234 LIQCVAXXXXXXXXXXXXNPLDIVRARLQVE 264
           +    +             PLD  R RL  +
Sbjct: 116 VGNLASGGAAGATSLCFVYPLDFARTRLAAD 146



 Score = 25.4 bits (53), Expect = 0.68
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 183 RVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDEL--LKISPVWVSHLLIQCVAX 240
           ++++  G  G YRG+  S+   +   A ++  Y   +  L   K +P  +S  + Q V  
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224

Query: 241 XXXXXXXXXXXNPLDIVRARLQVE 264
                       P D VR R+ ++
Sbjct: 225 VAGIVSY-----PFDTVRRRMMMQ 243


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 82  YRGFWLSSIISGVFYISTYEGVRFELGKYDISPKWKSFIGGGCASIVGQTIIVP 135
           Y G  +S    G        G+R E   +D+ P++ S    G  S+V  T   P
Sbjct: 333 YSGTLISHYEDGETKSRFISGIRSEQTIFDVKPEFGSIYFLGNYSLVPTTTASP 386


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 267 GTMKQVFKQLWAE 279
           GT K ++KQ+W++
Sbjct: 283 GTYKTLYKQMWSQ 295


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,865
Number of Sequences: 429
Number of extensions: 3262
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 12
length of query: 326
length of database: 140,377
effective HSP length: 58
effective length of query: 268
effective length of database: 115,495
effective search space: 30952660
effective search space used: 30952660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)