GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001668-TA|BGIBMGA001668-PA|undefined
         (104 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   1.8  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   2.4  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   2.4  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   3.2  
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    25   3.2  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    24   5.6  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    23   7.4  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    23   7.4  

>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 50  TLLGLVYLPNKLRLFGTVPGTSGMDREVEDENVQILRQM 88
           +LLG + L N L +FG    T+G+ RE+   N+ + + M
Sbjct: 147 SLLGSI-LSNLLLVFGMCLVTTGIRREITTFNITVAQTM 184


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 38  NNNGETEHLDVITLLGL--VYLPNKLR--LFGTVPGTSGMDREVEDENVQILRQMGNFRR 93
           +N+ E + LD+ TL     +    K+   LF     +SG    V+ +N+ +   +     
Sbjct: 72  SNDDEEDDLDITTLFRCRCMIFDAKINPALFDLSSTSSGSIEHVDHQNISLEASLAEEEE 131

Query: 94  RKTGNTK 100
           RK G+ K
Sbjct: 132 RKKGDAK 138


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 18  VAFMDLGTAGRSYIEGRSFLNNNGETEHL 46
           VA  DLG   RSY EGRS +   G  + +
Sbjct: 388 VACHDLGAYIRSYPEGRSLIIKYGAKQRI 416


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 28  RSYIEGRSFLNNNGETEHLDVITLLGLVYLPNKLRLFGTVPGTSGMDREVEDENVQIL 85
           R ++     LNN G  + L +  L   V LP K +  GT P     +++ E+ N+Q++
Sbjct: 50  RGWVYENPDLNNLGRKDRLMLNLLRRYVGLPPKSKETGTYP-----EKDDENTNLQVV 102


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 16 AFVAFMDLGTAGRSYIEGRSFLNNNGETEHLDVITLL 52
          AF+ FM+   +   Y+E  + + +NG T  +    +L
Sbjct: 40 AFMEFMETRNSKSKYVEAFNTVQSNGATSAISTFHIL 76


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 42  ETEHLDVITLLGLVYLPNKLRLFG 65
           ETE   V T+ G+  + N L++FG
Sbjct: 634 ETEKRPVFTMFGISGMGNHLQIFG 657


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 20  FMDLG---TAGRSYIEGRSFLNNNGETEHLDVITLLGLVYLPN 59
           F D+G   +A RSY + R +  N G+  HL +  +   +++ N
Sbjct: 122 FADVGQFDSALRSYAKVREYCTNAGQIAHLSLELMRISIWIGN 164


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 6/22 (27%), Positives = 16/22 (72%)

Query: 76  EVEDENVQILRQMGNFRRRKTG 97
           ++ D+  Q ++++GN++ + TG
Sbjct: 712 DLSDKEKQFIKEIGNYKEKVTG 733


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.139    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,595
Number of Sequences: 5004
Number of extensions: 19474
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 2,362,478
effective HSP length: 63
effective length of query: 41
effective length of database: 2,047,226
effective search space: 83936266
effective search space used: 83936266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)