Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001668-TA|BGIBMGA001668-PA|undefined
(104 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0241 + 1992553-1993231,1993820-1993918,1994611-1994649,199... 28 1.6
10_08_0074 - 14668625-14669797 27 2.8
03_02_0271 + 7029410-7029949,7030054-7030566 27 2.8
04_01_0510 - 6672993-6672999,6673102-6673144,6673719-6673992,667... 26 4.9
10_01_0206 - 2206359-2209142 26 6.4
04_04_0017 + 22176759-22177406 26 6.4
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 26 6.4
05_07_0192 - 28314224-28316287 25 8.5
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468... 25 8.5
>01_01_0241 +
1992553-1993231,1993820-1993918,1994611-1994649,
1994806-1995857
Length = 622
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 33 GRSFLN---NNGETEHLDVITLLGLVYLPNKLRLFGTVPGTSGMDREVEDENVQILRQMG 89
G FLN + G T H+++++LLG +K L +D + E +I+ G
Sbjct: 374 GEEFLNEVISIGRTSHVNIVSLLGFCLQGSKRALVYEYMANGSLDNYIYSEESKIVVGWG 433
Query: 90 NFRRRKTG 97
++ G
Sbjct: 434 KLQQIAIG 441
>10_08_0074 - 14668625-14669797
Length = 390
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 45 HLDVITLLGLVYLPNKLRLFGTVPGTSGMDREVEDENVQILRQMGNFRRRKTG 97
HLD I VY + RLF G + D E++ ++ L Q+ F G
Sbjct: 92 HLDEIVTDKNVYAQHGFRLFDEFAGDNDDDDELQPSSIADLGQVSTFGGNNIG 144
>03_02_0271 + 7029410-7029949,7030054-7030566
Length = 350
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 59 NKLRLFGTVPGTSGMDREVEDENVQI 84
N+LRL G VP T+ + R E+E V +
Sbjct: 81 NRLRLDGLVPPTTAVTRPPEEEGVGV 106
>04_01_0510 -
6672993-6672999,6673102-6673144,6673719-6673992,
6674092-6674266,6674414-6674633,6674873-6675083,
6676258-6676338
Length = 336
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 25 TAGRSYIEGRSFLNNNGETEHLDVITLLGLVYLPNKLRLFGTVPGTSGMDREVEDENVQI 84
T+ + + E ++ L + EH +++ LLG+ KL ++ +P S +D + D +
Sbjct: 44 TSSQGFHELKNDLVLAAKLEHKNLVRLLGVCLKEEKLLVYEYMPNISLLDTFLFDSD--- 100
Query: 85 LRQMGNFRRR 94
RQ ++R+R
Sbjct: 101 KRQQLDWRKR 110
>10_01_0206 - 2206359-2209142
Length = 927
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 37 LNNNGETEHLDVITLLGLVYLPNKLR 62
LNNN +H+ I L +YLP L+
Sbjct: 407 LNNNPGLDHVRNILYLSFIYLPTYLK 432
>04_04_0017 + 22176759-22177406
Length = 215
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 67 VPGTSGMDREVEDENVQILRQMGNFRRRKTGNTK 100
VPG D VE E+ ++LR G RR +T K
Sbjct: 93 VPGMRKEDLRVEVEDNRVLRISGERRREETTEQK 126
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 19 AFMDLGTAGRSYIEGRSFLNNN--GETEHLDVITLLGLVYLPNKLRLFGTVPGTSGMDR 75
+F+ LG G S E L G + L I + V + RL G+ PGT+G D+
Sbjct: 379 SFLFLGPTGVSKTELAKALAEQLFGNAKLLVRIDMSEYVNASSVTRLIGSAPGTNGYDK 437
>05_07_0192 - 28314224-28316287
Length = 687
Score = 25.4 bits (53), Expect = 8.5
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 8 LYAFRGWIAFVAFMDLGTAGRSYIEGRSFLNNNGETEHLDVITLLGLVYLPNKLRLFGTV 67
++AF I F+D G S RS + N G+ +H+ + +LG K + G+
Sbjct: 179 VFAFNSMIN--GFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHC-ASTKEVVLGSQ 235
Query: 68 PGTSGMDREVE 78
T + R +E
Sbjct: 236 VHTQALKRRLE 246
>01_06_1783 +
39845998-39846174,39846260-39846534,39846758-39846891,
39846992-39847116,39847312-39847494,39847610-39847644,
39847756-39847912,39847936-39848049,39848143-39848235,
39848316-39848455,39848606-39848676,39848759-39848839,
39851475-39851954,39852110-39852387,39853346-39854143
Length = 1046
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 53 GLVYL-PNKLRLFGTVPGTSGMDREVED 79
GL YL + L L VPG +G D E ED
Sbjct: 17 GLAYLLVSVLLLASRVPGAAGADSEFED 44
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.139 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,207
Number of Sequences: 37544
Number of extensions: 118251
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 10
length of query: 104
length of database: 14,793,348
effective HSP length: 72
effective length of query: 32
effective length of database: 12,090,180
effective search space: 386885760
effective search space used: 386885760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
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