GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001668-TA|BGIBMGA001668-PA|undefined
         (104 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)               31   0.13 
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)                     27   2.9  
SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)                  26   5.0  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.7  
SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  

>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
          Length = 413

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 37  LNNNGETE---HLDVITLLGLVYLPNKLRLFGTVPGTSGMDREVEDENVQILRQMGNFRR 93
           LN+N E E   HL+    + L+ + NK R+  T+  +SG D + ++  +Q LR      +
Sbjct: 269 LNSNVEDELLKHLNRQAQVKLLKVINKARVEETLVESSGADEDTDNGTIQSLRSQLKEAQ 328

Query: 94  RKTGNTK 100
            K G+ K
Sbjct: 329 EKLGSLK 335


>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2143

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 62  RLFGTVPGTSGMDREVEDENVQILRQMGNFRRRKTGNT 99
           R+F T  G  G + EV+     I ++ GN + RK   T
Sbjct: 148 RVFSTSSGGGGKETEVDAFEAVIKQRQGNLKPRKVETT 185


>SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)
          Length = 1189

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 45  HLDVITLLGLVYLPNKLR----LFGTVPGTSGMDREVEDENVQILRQMGNFRRRK 95
           H +++T  G+++ PN+        G  P TS  D +  ++N Q+L +    +++K
Sbjct: 823 HANLVTDAGVLHAPNEGNDGELTSGHTPSTSANDGDTSNKNQQLLHKCVQAQKKK 877


>SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)
          Length = 794

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 28  RSYIEGRSFLNNNGETEHLDVITLLGLVYLP-NKLRLFGTVPGTSGMDREVEDENVQILR 86
           + YI G  +   N +T  LD I     +YL  N+ RL     G S M   V   N++ L 
Sbjct: 80  KEYITGVCYSEKNPKTNTLDSIDCQAPIYLTVNRERLLEL--GKSNMAVAVATSNLEQLS 137

Query: 87  QMGN 90
            + N
Sbjct: 138 SLNN 141


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 60   KLRLFGTVPGTSGMDREVEDENVQI 84
            KL +F TV G  GM + V  ENV +
Sbjct: 1006 KLPVFETVGGVKGMAKHVSIENVPV 1030


>SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 28  RSYIEGRSFLNNNGETEHLDVIT---LLGLVYL 57
           RSY  GR +L  N   E  D  T   L GL YL
Sbjct: 427 RSYFSGRRYLPMNNRNEQEDKNTAERLFGLAYL 459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.139    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,494,688
Number of Sequences: 59808
Number of extensions: 129076
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 6
length of query: 104
length of database: 16,821,457
effective HSP length: 72
effective length of query: 32
effective length of database: 12,515,281
effective search space: 400488992
effective search space used: 400488992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)