GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001668-TA|BGIBMGA001668-PA|undefined
         (104 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071390-1|AAL49012.1|  169|Drosophila melanogaster RE44773p pro...    68   3e-12
AY069274-1|AAL39419.1|  169|Drosophila melanogaster GM10285p pro...    68   3e-12
AE014297-2867|AAF55807.2|  169|Drosophila melanogaster CG17270-P...    68   3e-12

>AY071390-1|AAL49012.1|  169|Drosophila melanogaster RE44773p
          protein.
          Length = 169

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 29/44 (65%), Positives = 38/44 (86%)

Query: 4  QNKVLYAFRGWIAFVAFMDLGTAGRSYIEGRSFLNNNGETEHLD 47
          + ++LYAFRGWIAFVAFMDLGTA RSYIE RSFL ++ +T+ ++
Sbjct: 11 RERLLYAFRGWIAFVAFMDLGTAFRSYIERRSFLGDHSDTQFIE 54



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 7/50 (14%)

Query: 46  LDVITLLGLVYLPNKLRLFGTVPGTSGMDREVEDENVQILRQMGNFRRRK 95
           L+ ITLLGL+Y+P +LRL+        MD  ++DEN Q+L+QM  F+RR+
Sbjct: 123 LNSITLLGLIYIPKRLRLW-----EPNMD--LDDENSQLLKQMTGFKRRR 165


>AY069274-1|AAL39419.1|  169|Drosophila melanogaster GM10285p
          protein.
          Length = 169

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 29/44 (65%), Positives = 38/44 (86%)

Query: 4  QNKVLYAFRGWIAFVAFMDLGTAGRSYIEGRSFLNNNGETEHLD 47
          + ++LYAFRGWIAFVAFMDLGTA RSYIE RSFL ++ +T+ ++
Sbjct: 11 RERLLYAFRGWIAFVAFMDLGTAFRSYIERRSFLGDHSDTQFIE 54



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 7/50 (14%)

Query: 46  LDVITLLGLVYLPNKLRLFGTVPGTSGMDREVEDENVQILRQMGNFRRRK 95
           L+ ITLLGL+Y+P +LRL+        MD  ++DEN Q+L+QM  F+RR+
Sbjct: 123 LNSITLLGLIYIPKRLRLW-----EPNMD--LDDENSQLLKQMTGFKRRR 165


>AE014297-2867|AAF55807.2|  169|Drosophila melanogaster CG17270-PA
          protein.
          Length = 169

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 29/44 (65%), Positives = 38/44 (86%)

Query: 4  QNKVLYAFRGWIAFVAFMDLGTAGRSYIEGRSFLNNNGETEHLD 47
          + ++LYAFRGWIAFVAFMDLGTA RSYIE RSFL ++ +T+ ++
Sbjct: 11 RERLLYAFRGWIAFVAFMDLGTAFRSYIERRSFLGDHSDTQFIE 54



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 7/50 (14%)

Query: 46  LDVITLLGLVYLPNKLRLFGTVPGTSGMDREVEDENVQILRQMGNFRRRK 95
           L+ ITLLGL+Y+P +LRL+        MD  ++DEN Q+L+QM  F+RR+
Sbjct: 123 LNSITLLGLIYIPKRLRLW-----EPNMD--LDDENSQLLKQMTGFKRRR 165


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.322    0.139    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,189,286
Number of Sequences: 52641
Number of extensions: 202810
Number of successful extensions: 305
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 6
length of query: 104
length of database: 24,830,863
effective HSP length: 74
effective length of query: 30
effective length of database: 20,935,429
effective search space: 628062870
effective search space used: 628062870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)