GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001668-TA|BGIBMGA001668-PA|undefined
         (104 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical...    26   5.8  
AC006617-6|AAF39769.1|  303|Caenorhabditis elegans Hypothetical ...    26   5.8  
U64847-5|AAB04874.1|  463|Caenorhabditis elegans Rh (rhesus) ant...    25   7.7  
AF183391-1|AAF97865.1|  463|Caenorhabditis elegans Rh-like prote...    25   7.7  

>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
           protein C49C3.4 protein.
          Length = 1566

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 29  SYIEGRSFLNNNGETEHLDVITLLGLVYLPNKLRLFGTVPGTSGMDREVEDENV-QILRQ 87
           SY +   F+ N G    L + + +G + +P       TVP T  +     D NV Q+ R+
Sbjct: 793 SYNQNLLFVRNIGSNRFLSLGSSIGTLRIPKSPTESATVPVTITVSLSAVDTNVPQLPRR 852

Query: 88  M 88
           +
Sbjct: 853 L 853


>AC024776-24|ABN43079.1|  408|Caenorhabditis elegans Hypothetical
          protein Y41D4B.24 protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 61 LRLFGTVPGTSGMDREVEDENVQILRQ 87
          L L  T+P TSG + E+ED+ +  + Q
Sbjct: 3  LPLNSTIPSTSGNETEIEDDCIYEVMQ 29


>AC006617-6|AAF39769.1|  303|Caenorhabditis elegans Hypothetical
           protein C39B5.4 protein.
          Length = 303

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 26  AGRSYIEGRSFLNNNGETEHLDVITLLGLVYLPNKLRLFG--TVPGTSGMDREVEDENVQ 83
           A  S+I G S   +  +  ++ V+TL+GL  +   L  F   T+        +  DE + 
Sbjct: 130 AHNSHIYGTSLFQSFKKCANVKVLTLIGLKDILTMLPYFDAETLENFQLWGADAIDEQIT 189

Query: 84  ILRQMGNFRRRKTGNT 99
           IL Q  N ++ +  N+
Sbjct: 190 ILDQWKNAKKFQLWNS 205


>U64847-5|AAB04874.1|  463|Caenorhabditis elegans Rh (rhesus)
           antigen related protein1 protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 16  AFVAFMDLGTA-GRSYIEGRSFLNNNGETEHLDVITLLGLVYL 57
           AF A+  L  A G    E R    N G T H D+  ++G ++L
Sbjct: 179 AFGAYFGLACAKGFGKKEQRGH-TNEGSTYHTDIFAMIGAIFL 220


>AF183391-1|AAF97865.1|  463|Caenorhabditis elegans Rh-like
           protein-2 protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 16  AFVAFMDLGTA-GRSYIEGRSFLNNNGETEHLDVITLLGLVYL 57
           AF A+  L  A G    E R    N G T H D+  ++G ++L
Sbjct: 179 AFGAYFGLACAKGFGKKEQRGH-TNEGSTYHTDIFAMIGAIFL 220


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.139    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,277
Number of Sequences: 27539
Number of extensions: 101591
Number of successful extensions: 208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 5
length of query: 104
length of database: 12,573,161
effective HSP length: 71
effective length of query: 33
effective length of database: 10,617,892
effective search space: 350390436
effective search space used: 350390436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)