GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001668-TA|BGIBMGA001668-PA|undefined
         (104 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   0.44 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   1.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   7.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 0.44
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 41  GETEHLDVITLLGLVYLPNKLRLFGTVPGTSGMDR--EVEDENVQILRQMGNFRRRKTG 97
           G+ EH +VI L G+V   N + +         +D      D   Q+L+ +G  R   +G
Sbjct: 689 GQFEHPNVIFLQGVVTKSNPVMIITEFMENGSLDTFLRANDGKFQVLQLVGMLRGIASG 747



 Score = 20.2 bits (40), Expect = 5.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 63  LFGTVPGTSGMDREVEDENVQI 84
           ++   P   G+D   ED+N+Q+
Sbjct: 510 VYKKTPHAMGLDYVGEDDNMQV 531


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)

Query: 27 GRSYIEGRSFL--NNNGE 42
          GRSY +GR F+  NNN +
Sbjct: 24 GRSYGKGRGFIIQNNNND 41


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 77  VEDENVQILRQMGNFRRRKTGNTKN 101
           V  E+ Q L   GN     T NT N
Sbjct: 709 VPKESTQSLTTTGNVSYLTTNNTSN 733


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.139    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,264
Number of Sequences: 429
Number of extensions: 1173
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 104
length of database: 140,377
effective HSP length: 49
effective length of query: 55
effective length of database: 119,356
effective search space:  6564580
effective search space used:  6564580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)