GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001668-TA|BGIBMGA001668-PA|undefined
         (104 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70110.1 68414.m08068 lectin protein kinase family protein co...    29   0.78 
At1g03530.1 68414.m00334 expressed protein similar to hypothetic...    28   1.0  
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR...    27   3.1  
At3g09890.1 68416.m01179 ankyrin repeat family protein contains ...    26   4.2  
At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K) ...    26   5.5  
At1g67000.1 68414.m07618 protein kinase family protein contains ...    26   5.5  

>At1g70110.1 68414.m08068 lectin protein kinase family protein
          contains Pfam domains, PF00138: Legume lectins alpha
          domain, PF00139: Legume lectins beta domain and
          PF00069: Protein kinase domain
          Length = 666

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 21 MDLGTAGRSYIEGRSFLNNNGETEHLD-VITLLGLVYLPNKLRLFGTVPGT 70
          ++  T+G  Y  G +++NNNG     +      G V+  ++LR   +V GT
Sbjct: 26 VEFNTSGNMYTSGSAYINNNGLIRLTNSTPQTTGQVFYNDQLRFKNSVNGT 76


>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
           protein GB:O14360
          Length = 797

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 74  DREVEDENVQILRQMGNFRRRKTGNTKNK 102
           ++E E   +Q L + G    +KTGNT+NK
Sbjct: 493 EKEAEYRRMQKLEKRGMMSDQKTGNTRNK 521


>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1127

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 29  SYIEGRSFLNNNGETEHLDVITLLGLVYLPNKLRL 63
           S++E  S + N  + EHL+++    LV LP  + L
Sbjct: 779 SFVEVPSSIQNLYQLEHLEIMNCRNLVTLPTGINL 813


>At3g09890.1 68416.m01179 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 206

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 31  IEGRSFLNNNGETEHLDVIT-LLGLVYLPNKLRLFGTVPG 69
           IEG + L++    EH+DV+  LLG    P     +G  PG
Sbjct: 144 IEGDTPLHHAARGEHVDVVRFLLGSGASPTTQNSYGKTPG 183


>At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K)
           identical to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 665

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 33  GRSFLN---NNGETEHLDVITLLGLVYLPNKLRLFGTVPGTSGMDREV 77
           G  F+N   +   T H+++++LLG  Y  NK  +         +D+ +
Sbjct: 369 GEEFINEVASMSRTSHVNIVSLLGFCYEKNKRAIIYEFMPNGSLDKYI 416


>At1g67000.1 68414.m07618 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 717

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 32  EGRSFLN---NNGETEHLDVITLLGLVYLPNKLRLFGTVPGTSGMDREVEDEN 81
           +G  F+N   +  +T H+++++LLG     ++  +     G   +D+ + D++
Sbjct: 418 DGEDFINEVASMSQTSHVNIVSLLGFCCEGSRRAIIYEFLGNGSLDKFISDKS 470


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.139    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,804
Number of Sequences: 28952
Number of extensions: 103405
Number of successful extensions: 219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 6
length of query: 104
length of database: 12,070,560
effective HSP length: 71
effective length of query: 33
effective length of database: 10,014,968
effective search space: 330493944
effective search space used: 330493944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)