Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001666-TA|BGIBMGA001666-PA|IPR001487|Bromodomain,
IPR009057|Homeodomain-like
         (820 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   5.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   5.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 58  CAAQYGTLLEHVETPKRKKRNSDGGVETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMK 117
           C A  G   E V+  +++ +  D        S+   +  +RI E +K +    +Q    +
Sbjct: 170 CLAM-GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYE 228

Query: 118 DELSEIRNPSTSDERLLELWA 138
           + +S I N +      L  WA
Sbjct: 229 NAVSHICNATNKQLFQLVAWA 249


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 58  CAAQYGTLLEHVETPKRKKRNSDGGVETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMK 117
           C A  G   E V+  +++ +  D        S+   +  +RI E +K +    +Q    +
Sbjct: 170 CLAM-GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYE 228

Query: 118 DELSEIRNPSTSDERLLELWA 138
           + +S I N +      L  WA
Sbjct: 229 NAVSHICNATNKQLFQLVAWA 249


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.126    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,817
Number of Sequences: 429
Number of extensions: 4655
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 820
length of database: 140,377
effective HSP length: 63
effective length of query: 757
effective length of database: 113,350
effective search space: 85805950
effective search space used: 85805950
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 48 (23.4 bits)