Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001666-TA|BGIBMGA001666-PA|IPR001487|Bromodomain,
IPR009057|Homeodomain-like
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 61 5e-10
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 61 7e-10
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 60 2e-09
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 52 2e-07
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 52 3e-07
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 52 3e-07
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 42 3e-04
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 36 0.030
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 33 0.12
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 32 0.37
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 31 0.85
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 30 1.1
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 29 2.6
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 29 3.4
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 29 3.4
SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch... 28 4.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 7.9
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 61.3 bits (142), Expect = 5e-10
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 686 RKSVMLVYSRLCAHKYASLFLRPISD--EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTA 743
+K + + +L K ++ F P+ + P Y +VK PMDL TI + + +
Sbjct: 90 QKYCLAIVRQLKRTKNSAPFKVPVDPIKQNIPDYPTIVKNPMDLGTIEKKLTSYEYSVPQ 149
Query: 744 EFQRDVLLMLSNALIYNSTEHSVHSMAKEMHEEAQCQLGMLVAAQAHAGLCAAPPLRRKR 803
EF D+ LM SN +YN TE V SM K + E + QL L A+ A AAP + K+
Sbjct: 150 EFIDDMNLMFSNCFLYNGTESPVGSMGKALQEVFERQLKQLPDAEQPA---AAPVKKSKQ 206
Query: 804 R 804
+
Sbjct: 207 K 207
Score = 60.1 bits (139), Expect = 1e-09
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 659 SGSESAAETSAPDS------PSGNDAERQHRLWRKSVMLVYSRLCAHKYASL---FLRPI 709
S S S A ++AP + P G R++ + V L +Y S F +P+
Sbjct: 224 STSASVAASTAPKAASPAVLPEGKPRRRKNNSQMRFCSTVLKELYKRQYESFAFPFYQPV 283
Query: 710 SDE--EAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVH 767
+ P Y V+K PMDL+TI+ ++ T EF+ D+LLM +N YN VH
Sbjct: 284 DPVACDCPDYFDVIKEPMDLSTIQSKLNKNEYSTLEEFESDILLMFNNCFTYNPPGTPVH 343
Query: 768 SMAKEM 773
M +++
Sbjct: 344 VMGRQL 349
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 60.9 bits (141), Expect = 7e-10
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 681 QHRLWRKSVMLVYSRLCAHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIR 740
Q L+ + +V +++ FL +S +AP Y V+K PMDL TI RN+ N +
Sbjct: 300 QEELYEAAEKVVLELRSYTEHSLAFLTKVSKRDAPDYYTVIKEPMDLGTILRNLKNLHYN 359
Query: 741 TTAEFQRDVLLMLSNALIYNS-TEHSVHSMAKEMHEEA 777
+ EF D++L+ SN +YNS +H + A+ M +++
Sbjct: 360 SKKEFVHDLMLIWSNCFLYNSHPDHPLRVHAQFMKDKS 397
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 662 ESAAETSAPDSPSG--NDAERQHRLWRKSVMLVYSRLCAHKYASLFLRPISDEEAPGYSV 719
E A T P + N+ ++ + ++ +++ + + H++ + F P++ +EAP Y
Sbjct: 165 EVAPTTKTPKKRAALSNEEKQSLKKFQSAMLPMLDNISNHRFGAPFSHPVNRKEAPDYDS 224
Query: 720 VVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTE 763
+V +P DL T++ I GNI E R+VL + +N +YN ++
Sbjct: 225 LVYKPQDLRTLKNMIKEGNITEVDELYREVLRIFANCKMYNGSD 268
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 691 LVYSRLCAHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVL 750
++++ + H + F++P+S E+ P Y V++ PMDL+T+ + N + EF RD
Sbjct: 354 MLFTEMQNHPSSWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFIRDAK 413
Query: 751 LMLSNALIYNSTEHSVHSMAKEMHEEAQCQL 781
+ N YN + + + A + + Q +L
Sbjct: 414 YIFDNCRSYNDSNTTYYKNADRLEKFFQKKL 444
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 704 LFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTE 763
LFL P + + P Y +++KRP+ L I+RNI N E D +LM +NA YN
Sbjct: 1543 LFLYPPNRKLYPDYYIIIKRPIALGKIKRNIKNDRYGDVGELIADFMLMFNNAYTYNEEH 1602
Query: 764 HSVHSMAKEMHE 775
V+ AK M +
Sbjct: 1603 SIVYEDAKLMEK 1614
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 712 EEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 771
+ P Y ++K P+DL T+++ +G + F D+ LM SN +YN TE V M K
Sbjct: 263 QNIPDYPTIIKNPIDLGTMQKKFSSGVYSSAQHFIDDMNLMFSNCFLYNGTESPVGVMGK 322
Query: 772 EMHEEAQCQLGMLVAA 787
+ + QL L +A
Sbjct: 323 NLQATFERQLKQLPSA 338
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 701 YASLFLRPISDEEA--PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALI 758
YA F +P++ P Y V+K PMDL T++ +++ + F+ D++LM N
Sbjct: 412 YAYPFYKPVNPTACGCPDYFKVIKHPMDLGTMQNKLNHNEYASMKAFEADMVLMFKNCYK 471
Query: 759 YNSTEHSVHSMAKEM 773
+NS VH M K++
Sbjct: 472 FNSAGTPVHLMGKKL 486
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 704 LFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTE 763
LFL S + P Y +++K P+ L IR++I+ +T + D++ M +NA YN
Sbjct: 1091 LFLELPSKKLYPDYYMIIKSPIALDAIRKHINGTFYKTLEAMKSDLMTMFNNARTYNEEG 1150
Query: 764 HSVHSMAKEMHEEAQCQL 781
V+ A +M + ++
Sbjct: 1151 SFVYEDANKMQTAMETKI 1168
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 35.5 bits (78), Expect = 0.030
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 715 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMH 774
P Y ++K PM + + + G T F +D+ M NA YN+ V+ A+++
Sbjct: 180 PDYYEIIKSPMTIKMLEKRFKKGEYTTLESFVKDLNQMFINAKTYNAPGSFVYEDAEKLS 239
Query: 775 E 775
+
Sbjct: 240 Q 240
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 715 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYN 760
P Y ++++P+ +R G + +F D+ LM+SNA YN
Sbjct: 47 PDYYQIIQKPICYKMMRNKAKTGKYLSMGDFYDDIRLMVSNAQTYN 92
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 79 SDGGVETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIRNPSTS-DERLLELW 137
++ + +E IL+R TQ+R+A I+ + +E QQ+E ++ E + ++ + + LLE
Sbjct: 870 TERAIALDKEEILRR-TQERLANIEDSFSETKQQNENLQRESASLKQINNELESELLEKT 928
Query: 138 ANMES 142
+ +E+
Sbjct: 929 SKVET 933
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 715 PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVH 767
P Y +++PM L I++ + T +F D LM NA +N V+
Sbjct: 247 PEYYQAIEQPMALEVIQKKLSKHRYETIEQFVDDFNLMFDNAKSFNDPSSQVY 299
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 30.7 bits (66), Expect = 0.85
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 725 MDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHEEAQCQLGML 784
M+ I R + +G T EF RD+ ++ +A++ S + ++ AKEM A+ + L
Sbjct: 969 MNFEEIERRLWSGRYCTPKEFLRDIKMIKQDAIL--SGDVNLKHKAKEMFAHAELNVDEL 1026
Query: 785 VAAQAHAGLC 794
+ A+ C
Sbjct: 1027 IDAKLLYDCC 1036
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 292 DIDDIEIKAEDVYAFRDVDIHIPPVAL 318
D+DD IK +D+ +F +V++H+ P A+
Sbjct: 182 DLDDSIIKRDDLLSFCNVEVHVSPNAI 208
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 83 VETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIRNPSTSDERLLE 135
VE Q + K Q I+ K+I E+S Q E + L+E +NP+T D+ LL+
Sbjct: 482 VENSQNA--KDTIQKDISAFGKDIFELSAQSERILSNLAEKKNPNT-DQLLLQ 531
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 87 QESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIRNPSTSDERLLELWA 138
++S+ L D A + +AEM +Q + +KDE+S ++ + E+ +EL A
Sbjct: 70 KQSVFVCLQDDLAAATPEELAEMEKQIQELKDEVSVVK--TLYKEKCIELQA 119
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 95 TQDRIAEIQKNIAEMSQQHEVMKDELSEI 123
T DRI ++ +N+ + SQ+HE +D L EI
Sbjct: 419 TDDRINDLMRNLMKRSQEHEGFED-LEEI 446
>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 88 ESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIRNPSTSDERLLELWANME 141
+S++++L + +KN+A+ + H+ + D L I+NPS++ L N+E
Sbjct: 153 QSLIQKLEKTVYGMNEKNLAK--EAHDTLNDLLPYIQNPSSTWTNALNEQGNIE 204
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 317 ALQKGGAGGSKQEKPAPKKXXXXXXXXXXXXXSSEPMEESI---KEEPTSVEASEEAVIE 373
A ++ A ++E K+ SS P+ SI K P S++ +EE ++
Sbjct: 336 ANEEAEASDKRKEGFTEKEETADAVVTLVPSHSSSPVNYSINSAKSTPASIKVNEEILVA 395
Query: 374 DTEVADATL 382
D V+D L
Sbjct: 396 DHNVSDDIL 404
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.126 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,308
Number of Sequences: 5004
Number of extensions: 76512
Number of successful extensions: 204
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 20
length of query: 820
length of database: 2,362,478
effective HSP length: 79
effective length of query: 741
effective length of database: 1,967,162
effective search space: 1457667042
effective search space used: 1457667042
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)
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