GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001666-TA|BGIBMGA001666-PA|IPR001487|Bromodomain,
IPR009057|Homeodomain-like
         (820 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         27   1.5  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         27   2.6  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         27   2.6  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    25   8.0  

>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 774 HEEAQCQLGMLVAAQAHAGLCAAPPLRRKRRRHHSPLHHPAHY 816
           + EA  ++ +L   Q H      P +++     H P HHP HY
Sbjct: 106 NREAGMKINLLNHHQHHHQHPHLPHVQQHHPSVHHPAHHPLHY 148


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 795 AAPPLRRKRRRHHSPLHHPAHYTRP 819
           A PP   +   HH   HHP H   P
Sbjct: 89  AQPPHHHQHPHHHQLPHHPHHQHHP 113


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 795 AAPPLRRKRRRHHSPLHHPAHYTRP 819
           A PP   +   HH   HHP H   P
Sbjct: 89  AQPPHHHQHPHHHQLPHHPHHQHHP 113


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 516 PEALPQDESVEEPPPAQQPEDVEEE 540
           P A+P  E  + PP     E+++EE
Sbjct: 455 PAAIPSQEVRKRPPEKNPKEEIDEE 479


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.311    0.126    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,041
Number of Sequences: 2123
Number of extensions: 16424
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 8
length of query: 820
length of database: 516,269
effective HSP length: 70
effective length of query: 750
effective length of database: 367,659
effective search space: 275744250
effective search space used: 275744250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)