Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001666-TA|BGIBMGA001666-PA|IPR001487|Bromodomain,
IPR009057|Homeodomain-like
(820 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot... 68 2e-11
At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot... 66 9e-11
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 66 9e-11
At5g55040.1 68418.m06859 DNA-binding bromodomain-containing prot... 66 1e-10
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 63 6e-10
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 62 2e-09
At5g46550.1 68418.m05731 DNA-binding bromodomain-containing prot... 58 2e-08
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 56 1e-07
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 55 2e-07
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 55 2e-07
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 55 2e-07
At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot... 54 3e-07
At2g34900.2 68415.m04284 DNA-binding bromodomain-containing prot... 54 4e-07
At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 54 5e-07
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 54 5e-07
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot... 53 7e-07
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot... 52 1e-06
At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot... 52 1e-06
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 51 3e-06
At1g61215.1 68414.m06898 DNA-binding bromodomain-containing prot... 50 6e-06
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 49 1e-05
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 49 1e-05
At3g52280.1 68416.m05746 DNA-binding bromodomain-containing prot... 47 6e-05
At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot... 46 8e-05
At3g57980.1 68416.m06462 DNA-binding bromodomain-containing prot... 45 2e-04
At2g42150.1 68415.m05217 DNA-binding bromodomain-containing prot... 45 2e-04
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 42 0.001
At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly... 42 0.001
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 35 0.19
At1g28120.1 68414.m03445 expressed protein 33 1.0
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea... 31 3.1
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 31 3.1
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 31 4.1
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 31 4.1
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 31 4.1
At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 30 5.4
At4g31360.1 68417.m04447 expressed protein 30 5.4
At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family pr... 30 5.4
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea... 30 7.1
At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH) protein-r... 30 7.1
At5g64690.1 68418.m08131 neurofilament triplet H protein-related... 29 9.4
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 29 9.4
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 29 9.4
>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 652
Score = 68.1 bits (159), Expect = 2e-11
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 686 RKSVMLVYSRLCAHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEF 745
+K ++ + RL ++ P+ EE P Y ++K PMD +T+R +D+G T +F
Sbjct: 177 KKLLLFILDRLQKKDTYGVYSDPVDPEELPDYFEIIKNPMDFSTLRNKLDSGAYSTLEQF 236
Query: 746 QRDVLLMLSNALIYNSTEHSVHSMAKEMHEEAQ 778
+RDV L+ +NA+ YNS + + A+ + E A+
Sbjct: 237 ERDVFLICTNAMEYNSADTVYYRQARAIQELAK 269
>At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 580
Score = 66.1 bits (154), Expect = 9e-11
Identities = 31/99 (31%), Positives = 54/99 (54%)
Query: 686 RKSVMLVYSRLCAHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEF 745
+K + + R+ ++ P EE P Y ++K PMD TT+R+ +++G T +F
Sbjct: 147 KKLLFFILDRVQKKDTYGVYSDPADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQF 206
Query: 746 QRDVLLMLSNALIYNSTEHSVHSMAKEMHEEAQCQLGML 784
++DV L+ +NA+ YNS + + A+ M E A+ G L
Sbjct: 207 EQDVFLICTNAMEYNSADTVYYRQARAMLELAKKDFGNL 245
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 66.1 bits (154), Expect = 9e-11
Identities = 31/99 (31%), Positives = 54/99 (54%)
Query: 686 RKSVMLVYSRLCAHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEF 745
+K + + R+ ++ P EE P Y ++K PMD TT+R+ +++G T +F
Sbjct: 146 KKLLFFILDRVQKKDTYGVYSDPADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQF 205
Query: 746 QRDVLLMLSNALIYNSTEHSVHSMAKEMHEEAQCQLGML 784
++DV L+ +NA+ YNS + + A+ M E A+ G L
Sbjct: 206 EQDVFLICTNAMEYNSADTVYYRQARAMLELAKKDFGNL 244
>At5g55040.1 68418.m06859 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 145
Score = 65.7 bits (153), Expect = 1e-10
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 686 RKSVMLVYSRLCAHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEF 745
+KS+ L+ +L ++ P+ EE P Y +++ PMD +T+R+ + NG+ T E
Sbjct: 48 KKSLELILDKLQKKDIYGVYAEPVDPEELPDYHDMIEHPMDFSTVRKKLANGSYSTLEEL 107
Query: 746 QRDVLLMLSNALIYNSTE 763
+ DVLL+ SNA+ YNS++
Sbjct: 108 ESDVLLICSNAMQYNSSD 125
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 63.3 bits (147), Expect = 6e-10
Identities = 30/99 (30%), Positives = 53/99 (53%)
Query: 686 RKSVMLVYSRLCAHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEF 745
+K + + R+ ++ P EE P Y ++K PMD TT+R+ +++G T +F
Sbjct: 146 KKLLFFILDRVQKKDTYGVYSDPADPEELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQF 205
Query: 746 QRDVLLMLSNALIYNSTEHSVHSMAKEMHEEAQCQLGML 784
+ +V L+ +NA+ YNS + + A+ M E A+ G L
Sbjct: 206 EANVFLICTNAMEYNSADTVYYRQARAMLELAKKDFGNL 244
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 61.7 bits (143), Expect = 2e-09
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 681 QHRLWRKSVML--VYSRLCAHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGN 738
QH L R + L V +R+ K S F P++DE+AP Y +++ PMD T+ + +D G
Sbjct: 892 QHALRRLRMCLRDVCNRILYDKRFSAFHFPVTDEDAPNYRSIIQIPMDTATLLQRVDTGQ 951
Query: 739 IRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHEEAQCQLGML 784
T F +DV L++ NA YN +++ + +E GML
Sbjct: 952 YLTCTPFLQDVDLIVRNAKAYNGDDYAGARIVSRAYELRDVVHGML 997
>At5g46550.1 68418.m05731 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 494
Score = 58.0 bits (134), Expect = 2e-08
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 661 SESAAETSAPDSPSGNDAERQHRL---WRKSVMLVYSRLCAHKYASLFLRPISDE--EAP 715
SE + + P +++ RL W + + L H+ LF P+ E P
Sbjct: 42 SEKSKKRGGPKELDEVQPKKKQRLDCDWSSQCLALLRFLMEHRGGWLFKEPVDPVKMEIP 101
Query: 716 GYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHE 775
Y V+++PMDL T++ + EF DV L +NA+ YN + VH++AKE++E
Sbjct: 102 DYFNVIQKPMDLGTVKSKLLKNVYSNADEFAADVRLTFANAMHYNPLWNEVHTIAKEINE 161
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 56.0 bits (129), Expect = 1e-07
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 695 RLCAHKYASLFLRPISDEEA--PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLM 752
+L +H ++ +F P+ + P Y +K PMDL T+++N+ +G + EF DV L
Sbjct: 186 KLWSHPHSWVFQAPVDVVKLNIPDYLTTIKHPMDLGTVKKNLASGVYSSPHEFAADVRLT 245
Query: 753 LSNALIYNSTEHSVHSM 769
+NA+ YN H VH M
Sbjct: 246 FTNAMTYNPPGHDVHIM 262
>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
low similarity to kinase [Gallus gallus] GI:1370092;
contains Pfam profile PF00439: Bromodomain
Length = 678
Score = 55.2 bits (127), Expect = 2e-07
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 695 RLCAHKYASLFLRPISDEEAPG---YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLL 751
+L HK++ +FL P+ D G Y +V +PMDL T++ N++ G R+ +F DV L
Sbjct: 259 KLMKHKWSWVFLNPV-DVVGLGLHDYHRIVDKPMDLGTVKMNLEKGLYRSPIDFASDVRL 317
Query: 752 MLSNALIYNSTEHSVHSMAKEM 773
+NA+ YN V+ MA+++
Sbjct: 318 TFTNAMSYNPKGQDVYLMAEKL 339
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 55.2 bits (127), Expect = 2e-07
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 704 LFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTE 763
LFL+P++ +EAP Y +VK PMDL+TIR + R +F+ DV + NA +YN
Sbjct: 1600 LFLKPVTKKEAPNYLEIVKCPMDLSTIRDKVRRMEYRDRQQFRHDVWQIKFNAHLYNDGR 1659
Query: 764 H-SVHSMAKEM 773
+ S+ +A E+
Sbjct: 1660 NLSIPPLADEL 1670
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 54.8 bits (126), Expect = 2e-07
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 663 SAAETSAPDSPSGNDAERQHRLWRKSVMLVYSRLCAHKYASLFLRPISDEEAPG---YSV 719
S + S PS ++E+ + + +L HK+A +F P+ D G Y
Sbjct: 147 SGLKRSNQFGPSDPESEKLLAGMLNTCSQILVKLMKHKWAWVFNTPV-DVVGLGLHDYHQ 205
Query: 720 VVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEM 773
VVK+PMDL T++ N+D G + +F DV L NA+ YN V+ MA ++
Sbjct: 206 VVKKPMDLGTVKLNLDKGFYVSPIDFATDVRLTFDNAMTYNPKGQDVYFMADKL 259
>At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 386
Score = 54.4 bits (125), Expect = 3e-07
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 659 SGSESAAETSAPDSPSGNDAERQHRLWR--------KSVMLVYSRLCAHKYASLFLRPIS 710
SG + A S P++ GN A ++ + + ++ ++ HK+A FL P+
Sbjct: 77 SGGKKIA-ISQPNNSKGNSAGKEKSKGKHVSSPDLMRQFATMFRQIAQHKWAWPFLEPV- 134
Query: 711 DEEAPG---YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVH 767
D + G Y V+++PMDL TI++ +++ E DV L+ NA+ YN + V+
Sbjct: 135 DVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYADVRLVFKNAMRYNEEKEDVY 194
Query: 768 SMAKEMHEE 776
MA+ + E+
Sbjct: 195 VMAESLLEK 203
>At2g34900.2 68415.m04284 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 276
Score = 54.0 bits (124), Expect = 4e-07
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 692 VYSRLCAHKYASLFLRPISDEEAPG---YSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRD 748
++ ++ HK+A FL P+ D + G Y V+++PMDL TI++ +++ E D
Sbjct: 7 MFRQIAQHKWAWPFLEPV-DVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYAD 65
Query: 749 VLLMLSNALIYNSTEHSVHSMAKEMHEE 776
V L+ NA+ YN + V+ MA+ + E+
Sbjct: 66 VRLVFKNAMRYNEEKEDVYVMAESLLEK 93
>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 477
Score = 53.6 bits (123), Expect = 5e-07
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 687 KSVMLVYSRLCAHKYASLFLRPISDE--EAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAE 744
K + +RL +HK F P+ P Y V+K PMDL TIR + G + +
Sbjct: 163 KECETLLNRLWSHKSGWPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCKGEYSSPLD 222
Query: 745 FQRDVLLMLSNALIYNSTEHSVHSMAK 771
F DV L SN++ YN + H+MA+
Sbjct: 223 FAADVRLTFSNSIAYNPPGNQFHTMAQ 249
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 53.6 bits (123), Expect = 5e-07
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 704 LFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYN 760
LFL+P+S +EAP Y +V+ PMDL+TIR + R +F+ DV + NA +YN
Sbjct: 1823 LFLKPVSKKEAPDYLDIVENPMDLSTIRDKVRKIEYRNREQFRHDVWQIKYNAHLYN 1879
>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 620
Score = 53.2 bits (122), Expect = 7e-07
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 695 RLCAHKYASLFLRPISDEEA--PGYSVVVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLM 752
RL + ++ LF P+ + P Y ++K PMDL T++ + +G + +EF DV L
Sbjct: 139 RLMSQQHCWLFNTPVDVVKLNIPDYFTIIKHPMDLGTVKSKLTSGTYSSPSEFSADVRLT 198
Query: 753 LSNALIYNSTEHSVHSMA 770
NA+ YN ++++V+ A
Sbjct: 199 FRNAMTYNPSDNNVYRFA 216
>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 688
Score = 52.4 bits (120), Expect = 1e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 684 LWRKSVMLVYSRLCAHKYASLFLRPISDEEAP--GYSVVVKRPMDLTTIRRNIDNGNIRT 741
L K + RL +H+Y +F P+ + Y V++ PMDL T++ + +G
Sbjct: 136 LLMKQCEALLKRLMSHQYGWVFNTPVDVVKLNILDYFNVIEHPMDLGTVKNKLTSGTYSC 195
Query: 742 TAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHE 775
+EF DV L SNA+ YN + V+ MA + +
Sbjct: 196 PSEFAADVRLTFSNAMTYNPPGNDVYVMADTLRK 229
>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 461
Score = 52.4 bits (120), Expect = 1e-06
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 687 KSVMLVYSRLCAHKYASLFLRPISDEEAPG---YSVVVKRPMDLTTIRRNIDNGNIRTTA 743
KS + ++L HK +F P+ D G Y ++K PMDL T++ + ++
Sbjct: 121 KSCNNLLTKLMKHKSGWIFNTPV-DVVTLGLHDYHNIIKEPMDLGTVKTRLSKSLYKSPL 179
Query: 744 EFQRDVLLMLSNALIYNSTEHSVHSMAK 771
EF DV L +NA++YN H V+ MA+
Sbjct: 180 EFAEDVRLTFNNAMLYNPVGHDVYHMAE 207
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
similar to SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439:
Bromodomain
Length = 487
Score = 51.2 bits (117), Expect = 3e-06
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 674 SGNDAERQHRLWRKSVMLVYSRLCAHKYASLFLRPISDEEAPG---YSVVVKRPMDLTTI 730
SG+ A++ K+ + ++L HK A +F P+ D + G Y +VK PMDL T+
Sbjct: 121 SGHGADKGTVQIFKNCNSLLTKLMKHKSAWVFNVPV-DAKGLGLHDYHNIVKEPMDLGTV 179
Query: 731 RRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAK 771
+ + ++ +F DV L +NA++YN H V+ A+
Sbjct: 180 KTKLGKSLYKSPLDFAEDVRLTFNNAILYNPIGHDVYRFAE 220
>At1g61215.1 68414.m06898 DNA-binding bromodomain-containing protein
contains Pfam profile PF00439: Bromodomain
Length = 475
Score = 50.0 bits (114), Expect = 6e-06
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 661 SESAAETSAPDSPSGNDAERQHRL-WRKSVMLVYSRLCAHKYASLFLRPISDEEAPGYSV 719
S+ AA TS+ S R H L K +M +Y+ + ++ A +F R + ++ Y
Sbjct: 247 SKEAASTSSSQS-------RGHSLALPKELMKIYNTIAQNECALVFRRRLDSQKRGRYKK 299
Query: 720 VVKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNS 761
+V+R MDL T++ I+ +I + E RD LL+ +NA I+ S
Sbjct: 300 LVRRHMDLDTVQSRINGCSISSAKELFRDFLLVANNAAIFYS 341
Score = 32.3 bits (70), Expect = 1.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 18 WNIREQLCLASAVVRSGDQNWMSVSRALKTLGEPN-RPPDCCAAQYGTL 65
W E+L L AV+R G +W V+ L++ P P+ C A+Y L
Sbjct: 14 WGTWEELLLGGAVLRHGTGDWTVVADELRSHSLPEIFTPEICKAKYKDL 62
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 49.2 bits (112), Expect = 1e-05
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 687 KSVMLVYSRLCAHKYASLFLRPISDEEAPG---YSVVVKRPMDLTTIRRNIDNGNIRTTA 743
K+ + RL HK+ +F P+ D + G Y +++ PMDL TI+ + ++
Sbjct: 423 KNCSALLERLMKHKHGWVFNAPV-DVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPR 481
Query: 744 EFQRDVLLMLSNALIYNSTEHSVHSMA 770
EF DV L NA+ YN VH MA
Sbjct: 482 EFAEDVRLTFHNAMTYNPEGQDVHLMA 508
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 49.2 bits (112), Expect = 1e-05
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 687 KSVMLVYSRLCAHKYASLFLRPISDEEAPG---YSVVVKRPMDLTTIRRNIDNGNIRTTA 743
K+ + RL HK+ +F P+ D + G Y +++ PMDL TI+ + ++
Sbjct: 423 KNCSALLERLMKHKHGWVFNAPV-DVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKSPR 481
Query: 744 EFQRDVLLMLSNALIYNSTEHSVHSMA 770
EF DV L NA+ YN VH MA
Sbjct: 482 EFAEDVRLTFHNAMTYNPEGQDVHLMA 508
>At3g52280.1 68416.m05746 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 369
Score = 46.8 bits (106), Expect = 6e-05
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 678 AERQHRLWRKSVMLVYSRLCAHKYASLFLRPISDEEAP--GYSVVVKRPMDLTTIRRNI- 734
A+R L R+ ++ ++ HK A F+ P++ E Y V+ +PMD +TI+ +
Sbjct: 88 AKRMQDLMRQ-FGTIFRQITQHKCAWPFMHPVNVEGLGLHDYFEVIDKPMDFSTIKNQME 146
Query: 735 --DNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMHEE 776
D + + D+ L+ NA+ YN V+SMAK++ E+
Sbjct: 147 AKDGTGYKHVMQIYADMRLVFENAMNYNEETSDVYSMAKKLLEK 190
>At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein
contains Pfam domains, Pfam PF00439: Bromodomain and
PF00249: Myb-like DNA-binding domain
Length = 646
Score = 46.4 bits (105), Expect = 8e-05
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 698 AHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTA-EFQRDVLLMLSNA 756
+H SLF R + +EA Y +VK+ +D+ TI+R + G+ +++ F RD+ L+ +NA
Sbjct: 321 SHPRGSLFERRLRSQEAKDYKSMVKQHLDIETIQRKLKQGSYDSSSLIFYRDLQLLFTNA 380
Query: 757 LIYNSTEHSVHSMAKEM 773
+++ S A E+
Sbjct: 381 IVFFPLSSSESMAAHEL 397
>At3g57980.1 68416.m06462 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 632
Score = 44.8 bits (101), Expect = 2e-04
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 659 SGSESAAETSAPDSPSGNDAERQ-HRLWRKSVML--VYSRLCAHKYASLFLRPISDEEAP 715
S S ET D P D ++++ +S L L +H S F R + +E
Sbjct: 245 SASFPRKETVDQDQPDNKDQSLTVNKIFVESQPLSDFIEILQSHPIGSHFSRRLETQETS 304
Query: 716 GYSVVVKRPMDLTTIRRNIDNGNIRTT-AEFQRDVLLMLSNALIYNSTEHSVHSMAKEMH 774
Y ++++ +D IR ++ G +T +F RD+LL+++N ++ + AK+++
Sbjct: 305 DYYRIIRQHIDFEMIRSRVEEGYYKTARTKFFRDLLLLINNVRVFYGEPSPEFNAAKQLY 364
Query: 775 EEAQCQLGMLVAAQ 788
+ + Q+ + Q
Sbjct: 365 QLIKKQMSFKIPKQ 378
>At2g42150.1 68415.m05217 DNA-binding bromodomain-containing protein
contains Pfam domains, PF00439: Bromodomain and PF00249:
Myb-like DNA-binding domain
Length = 631
Score = 44.8 bits (101), Expect = 2e-04
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 696 LCAHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRT-TAEFQRDVLLMLS 754
L +H S F R + +E Y +++ +D IR+ ++ G ++ F RD+LL+++
Sbjct: 283 LLSHPCGSHFSRRLERQETIEYGTIIREHVDFEIIRKRVEGGLYKSWRINFFRDLLLLVN 342
Query: 755 NALIYNSTEHSVHSMAKEMHEEAQCQL 781
NA ++ S A+++H+ + Q+
Sbjct: 343 NARVFYHRGSSEFKFAEQLHQLVKKQM 369
Score = 33.9 bits (74), Expect = 0.44
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 17 TWNIREQLCLASAVVRSGDQNWMSVSRALKTLGEPN 52
TW+ E+L LA AV R G ++W SVS ++ L PN
Sbjct: 15 TWSTWEELLLACAVHRHGTESWNSVSAEIQKL-SPN 49
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 42.3 bits (95), Expect = 0.001
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 698 AHKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGN-IRTTAEFQRDVLLMLSNA 756
+H S+F + ++ Y ++++ +D+ TI + ++ G+ + ++ F RD+ L+ +NA
Sbjct: 109 SHPRGSVFESRLRSQDTKDYKRLIRQHLDMKTIEKKMEKGSYVSSSLSFYRDLKLLFTNA 168
Query: 757 LIYNSTEHSVHSMAKEM 773
+++ T S A+E+
Sbjct: 169 IVFFPTSSSESIAAQEL 185
>At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly
identical to histone acetyltransferase GCN5 [Arabidopsis
thaliana] GI:13591696; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00439: Bromodomain
Length = 568
Score = 42.3 bits (95), Expect = 0.001
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 699 HKYASLFLRPISDEEAPGYSVVVKRPMDLTTIRRNIDNGNIRTTAE-FQRDVLLMLSNAL 757
H A F P+ + P Y ++K P+DL I + +++ T + F D M +N
Sbjct: 474 HADAWPFKEPVDSRDVPDYYDIIKDPIDLKVIAKRVESEQYYVTLDMFVADARRMFNNCR 533
Query: 758 IYNSTEHSVHSMAK--EMHEEAQCQLGMLVAAQA 789
YNS + + A E H ++ Q G+ A++
Sbjct: 534 TYNSPDTIYYKCATRLETHFHSKVQAGLQSGAKS 567
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487; contains
prenyl group binding site (CAAX box) Prosite:PS00294
Length = 769
Score = 35.1 bits (77), Expect = 0.19
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 690 MLVYSRLCAHKYASLFLRPISDEEA--PGYSVVVKRPMDLTTIRRNIDNGN-IRTTAEFQ 746
++V ++ + A F P++ E P Y ++K PMD TI N + GN + +
Sbjct: 220 LIVIKKIMKMEAADPFNVPVNPEALGIPDYFDIIKTPMDFGTICNNFEKGNKYMNSEDVY 279
Query: 747 RDVLLMLSNALIYNSTEHSVHSMAKEM 773
+DV + +N YN + + K +
Sbjct: 280 KDVNYIWNNCSKYNKKGDYIVDLMKRV 306
>At1g28120.1 68414.m03445 expressed protein
Length = 306
Score = 32.7 bits (71), Expect = 1.0
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 686 RKSVM-LVYSRLCAHKYASLFLRPISD-----EEAPGYSVVVKRPMD------LTTIRRN 733
RK++ L Y+ + +LFL + D EE+ Y +V R D + R
Sbjct: 125 RKTLQNLGYTDFTFEDFFALFLEQLDDILQGTEESISYDELVNRSRDQSVSDYIVMFFRF 184
Query: 734 IDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKE 772
+ G+IRT A+F + LSNA + + SV M +E
Sbjct: 185 VTAGDIRTRADFFEPFITGLSNATVDQFCKSSVEPMGEE 223
>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 433
Score = 31.1 bits (67), Expect = 3.1
Identities = 14/62 (22%), Positives = 36/62 (58%)
Query: 70 ETPKRKKRNSDGGVETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIRNPSTS 129
+ P +K ++ +E +ES+L++ Q R+AE Q +A + + + ++ ++S + + ++
Sbjct: 190 QLPILEKEMANLKLELQKESVLRQQEQHRLAEEQTRVASLMSEKQELEQKISVLSSRASV 249
Query: 130 DE 131
E
Sbjct: 250 SE 251
>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain
Length = 976
Score = 31.1 bits (67), Expect = 3.1
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 68 HVETPKRKKRNSDGGVETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIRNPS 127
H++TP+R ++ D G +P+ + TQ I + + S V+ D++ E+ N
Sbjct: 658 HLDTPERTSQSYDNGHTSPEVTCSDPRTQP-IERNESCESVFSSARSVLSDDVDELSNSE 716
Query: 128 T--SDERLLELWA 138
D+ +LE WA
Sbjct: 717 NDFGDDLILE-WA 728
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
{Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (4 copies)
Length = 1677
Score = 30.7 bits (66), Expect = 4.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 724 PMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSV 766
P+ L IR ++N R+ + DV +MLSNA + SV
Sbjct: 1617 PLSLEVIRSRLENNYYRSVEALRHDVSVMLSNAETFFGRNKSV 1659
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.7 bits (66), Expect = 4.1
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 326 SKQEKPAPKKXXXXXXXXXXXXXSSEPMEESIKEEPTSVEASEEAVIEDTEVADA 380
S EKP KK S E +ES KEE + + + D E+ DA
Sbjct: 309 SDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEESKDEKVTPKKKDSDVEMVDA 363
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 30.7 bits (66), Expect = 4.1
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 326 SKQEKPAPKKXXXXXXXXXXXXXSSEPME-ESIKEEPTSVEASEEAVIEDTEVADA 380
S+ EKPA KK SSE E ES EE T + S + + D E + A
Sbjct: 227 SEDEKPAQKKADTKASKKSSSDESSESEEDESEDEEETPKKKSSDVEMVDAEKSSA 282
>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
Sex-lethal interactor [Drosophila melanogaster]
GI:6049274; contains Pfam profile PF04801: Sin-like
protein conserved region
Length = 689
Score = 30.3 bits (65), Expect = 5.4
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 61 QYGTLLEHVETPKRKKRNSDGGVETPQESILKRLTQD---RIAEIQKNIAEMSQQHEVMK 117
+YG L++ + TPK + DG VE ++ +L +Q+ + +E++ +M E M
Sbjct: 378 EYGRLVQGLWTPKTRLLKLDGPVEAARDYVLSLFSQNTTIKYSEVEATGDKMKPLMERML 437
Query: 118 DELSEIRN 125
E ++ R+
Sbjct: 438 TEFAKERH 445
>At4g31360.1 68417.m04447 expressed protein
Length = 186
Score = 30.3 bits (65), Expect = 5.4
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 307 RDVDIHIPPVALQKGGAGGSKQEKPAPKKXXXXXXXXXXXXXSSEPMEESIKEEPTSVEA 366
R +D Q G KPA KK EE ++E +VE
Sbjct: 27 RSMDSRTRSQTQQNGAKAAGSATKPATKKAKRKNSAIETGRAKKGKKEEEVEEPEEAVE- 85
Query: 367 SEEAVIEDTEVADAT 381
EE E+ EV D T
Sbjct: 86 -EEVEKEEPEVEDPT 99
>At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family
protein / kinesin motor family protein similar to
kinesin-like protein GB:CAB41097 GI:5541717 from
[Arabidopsis thaliana]; contains Pfam profiles PF00225:
Kinesin motor domain, PF00514:
Armadillo/beta-catenin-like repeat
Length = 894
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 91 LKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIRNPSTSDERLLELWANMES 142
+ R Q+RI+E++KN AE + + E +K ++ + + +E+L+ N E+
Sbjct: 446 INRQAQNRISEVEKNFAE-ALEKEKLKCQMEYMESVKKLEEKLISNQRNHEN 496
>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 434
Score = 29.9 bits (64), Expect = 7.1
Identities = 13/52 (25%), Positives = 31/52 (59%)
Query: 70 ETPKRKKRNSDGGVETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELS 121
+ P +K ++ +E +ES+L++ Q R+AE Q +A + + + ++ ++S
Sbjct: 190 QLPILEKEMANLKLELQKESVLRQQEQHRLAEEQTRVASLMSEKQELEQKIS 241
>At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH)
protein-related identical to cDNA bHLH transcription
factor (bHLH gamma gene) GI:32562999; weak similarity to
bHLH transcription activator anthocyanin 1 [Petunia x
hybrida] GI:10998404
Length = 720
Score = 29.9 bits (64), Expect = 7.1
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 36 QNWMSVSRALKTLGEPNRPPDCCAAQYGTLLEHVETPKRKKRNSDGGVETPQESILKRLT 95
QN + A ++G + P + Q+ T L+ PK+ K+ + G + ++L
Sbjct: 504 QNSSDICGAFSSIGFSSTYPSSSSDQFQTSLD---IPKKNKKRAKPGESSRPRPRDRQLI 560
Query: 96 QDRIAEIQKNIAEMSQ 111
QDRI E+++ + S+
Sbjct: 561 QDRIKELRELVPNGSK 576
>At5g64690.1 68418.m08131 neurofilament triplet H protein-related
contains weak similarity to neurofilament triplet H
protein (200 kDa neurofilament protein) (Neurofilament
heavy polypeptide) (NF-H) (Swiss-Prot:P12036) [Homo
sapiens]
Length = 344
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 69 VETPKRKKRNS--DGGVETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIRNP 126
V+TP+ K N D E+ + + L + +E+ K +AE S+ EV ELSEI+
Sbjct: 152 VKTPETPKANEAEDNFSESWEVKFPEELEAKKTSEVVK-VAEESKVPEVSAPELSEIKVT 210
Query: 127 STSD 130
SD
Sbjct: 211 KESD 214
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 29.5 bits (63), Expect = 9.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 721 VKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMH 774
V ++L I ++ E DV LML A+ + H V S AK++H
Sbjct: 1942 VNNLLELREIDHRVERLEYAGVMELASDVQLMLRGAMQFYGFSHEVRSEAKKVH 1995
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 29.5 bits (63), Expect = 9.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 721 VKRPMDLTTIRRNIDNGNIRTTAEFQRDVLLMLSNALIYNSTEHSVHSMAKEMH 774
V ++L I ++ E DV LML A+ + H V S AK++H
Sbjct: 1941 VNNLLELREIDHRVERLEYAGVMELASDVQLMLRGAMQFYGFSHEVRSEAKKVH 1994
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.126 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,960,363
Number of Sequences: 28952
Number of extensions: 407466
Number of successful extensions: 1091
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1047
Number of HSP's gapped (non-prelim): 54
length of query: 820
length of database: 12,070,560
effective HSP length: 87
effective length of query: 733
effective length of database: 9,551,736
effective search space: 7001422488
effective search space used: 7001422488
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 63 (29.5 bits)
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