GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001665-TA|BGIBMGA001665-PA|IPR011497|Protease inhibitor,
Kazal-type
         (153 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984...    28   2.9  
01_06_0644 + 30821811-30821855,30822707-30822976,30823079-308243...    28   2.9  
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143...    28   2.9  
06_01_0063 - 534138-534605                                             28   3.8  
03_05_0092 - 20714102-20717902                                         27   8.7  

>04_04_0850 -
           28697462-28697684,28697894-28697971,28698103-28698495,
           28698590-28698893,28698978-28699188,28699943-28700674
          Length = 646

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 97  HEENIQLASREPCMMSAPYLSED-VMRPKGRMSKSDDIDTVLKF--IYERQRGNS 148
           H +++    ++ C M    L  D ++RP+G +   DD+D ++K   I +  R NS
Sbjct: 562 HADSVFTLYKDRCQMDNILLEMDRILRPEGTVIIRDDVDMLVKIKSITDGMRWNS 616


>01_06_0644 +
           30821811-30821855,30822707-30822976,30823079-30824383,
           30824551-30824692,30824752-30825275
          Length = 761

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)

Query: 98  EENIQLASREPCMMS--APYLSEDVMRPK 124
           E+NI+  S++PC++S  A ++S  ++ PK
Sbjct: 65  EDNIEFTSQQPCLVSPAAEHVSNTLLNPK 93


>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
            19118884-19118950,19119229-19119284,19119530-19119590,
            19120181-19120297,19120570-19120682,19120774-19120848,
            19121464-19122045,19122056-19122271,19122372-19122497,
            19126152-19126190,19126266-19126360,19126423-19126962,
            19127102-19127327,19127385-19127437,19127534-19127701,
            19128353-19128707,19128785-19128876,19129891-19129993
          Length = 1717

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)

Query: 98   EENIQLASREPCMMS--APYLSEDVMRPK 124
            E+NI+  S++PC++S  A ++S  ++ PK
Sbjct: 1078 EDNIEFTSQQPCLVSPAAEHVSNTLLNPK 1106


>06_01_0063 - 534138-534605
          Length = 155

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 56  YDALCPSSCPALNVMVCAECGHGIYRTFLSVCHMRMFRCRH 96
           +DAL  S  P L+V  CA C    ++   S    R  RCRH
Sbjct: 76  FDALSSSLQPPLHVATCAVCLRDFHK---SAQVRRAHRCRH 113


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 57   DALCPSSCPALNVMVCAECGHGIYRTFLSVCHMRMF-RCRHHE-ENIQLA 104
            + LC  +CPAL  +  +     + R  +S C  R+  RC   E +N+ +A
Sbjct: 1200 EELCIENCPALEALPASGLPTSLKRLSISKCSPRLTQRCLDDEPDNLNIA 1249


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.133    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,840,699
Number of Sequences: 37544
Number of extensions: 122055
Number of successful extensions: 263
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 5
length of query: 153
length of database: 14,793,348
effective HSP length: 76
effective length of query: 77
effective length of database: 11,940,004
effective search space: 919380308
effective search space used: 919380308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)