GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001665-TA|BGIBMGA001665-PA|IPR011497|Protease inhibitor,
Kazal-type
         (153 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthas...    27   4.5  

>U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical
           protein F25B4.6 protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 53  YKEYDALCPSSCPALNVMVCAECGHGIYRTFLSVCHMR 90
           Y+E  A C     A+  ++C +    I R F S CHM+
Sbjct: 159 YEEGPARCTGGAGAIAFLICPDASIPIDRQF-SACHMK 195


>U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthase
           protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 53  YKEYDALCPSSCPALNVMVCAECGHGIYRTFLSVCHMR 90
           Y+E  A C     A+  ++C +    I R F S CHM+
Sbjct: 155 YEEGPARCTGGAGAIAFLICPDASIPIDRQF-SACHMK 191


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.133    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,997
Number of Sequences: 27539
Number of extensions: 108740
Number of successful extensions: 209
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 2
length of query: 153
length of database: 12,573,161
effective HSP length: 75
effective length of query: 78
effective length of database: 10,507,736
effective search space: 819603408
effective search space used: 819603408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)