GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001665-TA|BGIBMGA001665-PA|IPR011497|Protease inhibitor,
Kazal-type
         (153 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replicati...    31   0.34 
At4g00750.1 68417.m00102 dehydration-responsive family protein s...    27   4.2  
At3g53700.1 68416.m05931 pentatricopeptide (PPR) repeat-containi...    27   7.3  
At4g01510.1 68417.m00194 transmembrane ARV1-like family protein ...    26   9.7  

>At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replication
           licensing factor Mcm7 (MCM7) identical to DNA
           replication licensing factor Mcm7 SP|P43299 PROLIFERA
           protein {Arabidopsis thaliana}; contains Pfam profile
           PF00493: MCM2/3/5 family
          Length = 716

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 66  ALNVMVCAECGHGIYRTFLSVCHMRMFRC 94
           A+ V  C +CGH IY+   S   M +F+C
Sbjct: 172 AVAVYTCEDCGHEIYQEVTSRVFMPLFKC 200


>At4g00750.1 68417.m00102 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 633

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 97  HEENIQLASREPCMMSAPYLSED-VMRPKGRMSKSDDIDTVLK 138
           H +++    ++ C M    L  D ++RPKG +   DDID + K
Sbjct: 545 HADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTK 587


>At3g53700.1 68416.m05931 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 754

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 103 LASREPCMMSAPYLSEDVMRPKGRMSKSDDIDTVLK 138
           LAS++P     P L E+++   GR    DD+  +L+
Sbjct: 72  LASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILE 107


>At4g01510.1 68417.m00194 transmembrane ARV1-like family protein
          contains similarity to ARV1 [Homo sapiens]
          gi|12044055|gb|AAG47671
          Length = 252

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 72 CAECGHGIYRTFL--SVCHMRMFRCRHHEE 99
          C ECGH +   F+  S  + R+ +C + EE
Sbjct: 32 CVECGHKVKSLFIQYSPGNFRLMKCENCEE 61


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.133    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,812
Number of Sequences: 28952
Number of extensions: 97577
Number of successful extensions: 204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 4
length of query: 153
length of database: 12,070,560
effective HSP length: 75
effective length of query: 78
effective length of database: 9,899,160
effective search space: 772134480
effective search space used: 772134480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)