Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001663-TA|BGIBMGA001663-PA|IPR007087|Zinc finger,
C2H2-type
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0316 - 21978330-21979397 42 5e-04
09_02_0366 + 7941550-7942161,7942230-7942775 42 6e-04
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 42 8e-04
06_03_0743 + 24069752-24070483,24071890-24072345 41 0.001
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 38 0.010
09_04_0564 + 18565583-18566449,18569662-18570123 38 0.014
08_02_1172 + 24898290-24899141,24900864-24901328 38 0.014
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 38 0.014
01_06_1495 + 37769982-37771496 38 0.014
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 37 0.018
07_03_1548 + 27630988-27631049,27631632-27631767,27631904-276320... 37 0.018
08_02_1602 - 28148255-28149413,28151927-28152087 36 0.031
03_06_0607 + 35037467-35038624 36 0.031
01_06_1412 - 37140654-37141088,37141549-37142214 36 0.031
05_05_0022 + 21592403-21593083,21593720-21594208 36 0.055
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 35 0.072
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 35 0.095
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019 34 0.13
09_02_0226 - 6007656-6008063,6012166-6012678 33 0.22
01_06_1284 + 35994595-35995074 33 0.22
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 33 0.29
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 32 0.51
07_03_1491 + 26953193-26954326 31 0.89
11_08_0054 - 28091294-28092208 31 1.2
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 31 1.2
11_08_0055 - 28095996-28096934 30 2.1
06_03_1478 - 30420097-30420651 30 2.1
03_06_0477 + 34210844-34211356 30 2.1
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 30 2.7
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 30 2.7
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 30 2.7
07_03_1165 - 24459156-24460139 29 3.6
05_05_0115 - 22493350-22493874 29 4.7
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 29 4.7
12_02_0916 - 24271151-24271894 29 6.3
01_05_0421 + 21990034-21990392,21991691-21992681 29 6.3
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307... 28 8.3
>02_04_0316 - 21978330-21979397
Length = 355
Score = 42.3 bits (95), Expect = 5e-04
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 15/146 (10%)
Query: 88 YICDICESNFPDKLRLKMHIASHFDVYE-CQYCRQICQGDSSKGRHVREHGAVLQCLKCD 146
+ CDIC F L+MH+ +H D ++ + Q GR VR C +
Sbjct: 144 HFCDICGKGFRRDANLRMHMRAHGDRFKTLDALSRPGQPKPPAGREVRFSCPYAGCNRNR 203
Query: 147 A--KFSERRDFYA---HHRRLH--EIFVCHHCG--VSFKMRYCIKDHLRR--RHAPKKCT 195
A +F + H RR H +++ C CG F + ++ HLR A +C+
Sbjct: 204 AHRRFRPLKSAVCARNHFRRSHCPKLYACERCGGKKRFAVLADLRSHLRHCGEEAQWRCS 263
Query: 196 CCNKTFARYKSLWMHTRL--SHASAV 219
C TF+R L+ H L H A+
Sbjct: 264 -CGTTFSRKDKLFGHLALFEGHTPAI 288
Score = 31.9 bits (69), Expect = 0.67
Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 22/148 (14%)
Query: 107 IASHFDVYECQYCRQICQGDSSKGRHVREHGAVLQCLKCDAKFSERRDFYAHHRRLHEIF 166
+A H V+ C C + + D++ H+R HG + L ++ + + R F
Sbjct: 139 LAEH--VHFCDICGKGFRRDANLRMHMRAHGDRFKTLDALSRPGQPKPPAGREVR----F 192
Query: 167 VCHHCGVS----------FKMRYCIKDHLRRRHAPKKCTC--C--NKTFARYKSLWMHTR 212
C + G + K C ++H RR H PK C C K FA L H R
Sbjct: 193 SCPYAGCNRNRAHRRFRPLKSAVCARNHFRRSHCPKLYACERCGGKKRFAVLADLRSHLR 252
Query: 213 LSHASAVPAYCVECDKHFTDVYKYRRHL 240
H + C F+ K HL
Sbjct: 253 --HCGEEAQWRCSCGTTFSRKDKLFGHL 278
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 134 REHGA-VLQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLRR---RH 189
R+HGA C +C +F+ R D+ H + +++ C CG FK + +KDH+R H
Sbjct: 272 RKHGARPYACRRCGKRFAVRGDWRTHEKNCGKLWFCV-CGSDFKHKRSLKDHVRSFGGGH 330
Query: 190 AP 191
AP
Sbjct: 331 AP 332
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 41.5 bits (93), Expect = 8e-04
Identities = 46/188 (24%), Positives = 69/188 (36%), Gaps = 28/188 (14%)
Query: 88 YICDICESNFPDKLRLKMHIASHFD----VYECQYCRQICQGDSSKGRHVREH-GAVLQC 142
+ C C ++F LK H+ SH D + + C RH+ +H G + C
Sbjct: 60 HTCQECGASFQKPAHLKQHMQSHSDERSFICPLEDCPFSYIRKDHLNRHMLKHQGKLFTC 119
Query: 143 LK--CDAKFSERRDFYAHHRRLHE---------IFVCHHCGVSFKMRYCIK------DHL 185
C KFS + + H + +HE FVC G + +Y K H+
Sbjct: 120 SMDGCGRKFSIKANMQRHVKEIHEDETATKSNRQFVCKEEGCNKVFKYASKMKKHEESHV 179
Query: 186 RRRHAPKKC--TCCNKTFARYKSLWMHTRLSHASAVPAYCVECDKHFTDVYKYRRHLNGP 243
+ + C C KTF + L H + H C E KH +RHL
Sbjct: 180 KLDYVEVVCCEPGCMKTFTNVECLRAHNQACHQYVQCDICGE--KHLKK--NIKRHLRAH 235
Query: 244 KHKPGKKR 251
+ P +R
Sbjct: 236 EEVPSTER 243
Score = 28.3 bits (60), Expect = 8.3
Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 23/212 (10%)
Query: 93 CESNFPDKLRLKMHIASH--FDVYECQYCRQICQGDSSKGRHVREHG-AVLQCLKCDA-- 147
C F ++K H SH D E C C + +R H A Q ++CD
Sbjct: 161 CNKVFKYASKMKKHEESHVKLDYVEVVCCEPGCMKTFTNVECLRAHNQACHQYVQCDICG 220
Query: 148 ----KFSERRDFYAHHR-RLHEIFVCHH--CGVSFKMRYCIKDHLRRRHAPKKCTCCNKT 200
K + +R AH E C C SF + + H++ H K C T
Sbjct: 221 EKHLKKNIKRHLRAHEEVPSTERIKCSFEGCECSFSNKSNLTKHIKASHDQVKPFACRFT 280
Query: 201 FARYKSLWMHTRLSHASAVPAYCVECDKHFTDVYKYRRHLNGPKHKPGKKRRSWSIGIYC 260
+ H R +H + + V +FT++ + + L+ P + G+KR++ ++
Sbjct: 281 GCEKVFPYKHVRDNHEKS--SAHVYTQANFTEMDE--QLLSCP--RGGRKRKAVTV---- 330
Query: 261 FTEMGRSVVPLAETIPPVNRGNNYSELLKEGG 292
+ R V + ++ G Y L GG
Sbjct: 331 -ETLTRKRVTMHGDASSLDNGTEYLRWLLSGG 361
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 134 REHGAV-LQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLR 186
R+HG C KC F+ R D+ H + +++ C CG FK + +KDH+R
Sbjct: 305 RKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCA-CGSDFKHKRSLKDHIR 357
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 37.9 bits (84), Expect = 0.010
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 145 CDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCI---KDHLRRRHAPKKCTC--CNK 199
CD FS ++D H R + + C F +Y + K H+ R P KCT C K
Sbjct: 1237 CDMSFSTQQDLLLHKRDICPVKGCKK--KFFCHKYLLQHRKVHIDER--PLKCTWKGCKK 1292
Query: 200 TFARYKSLWMHTRLSHASAVPAYCVE--CDKHFTDVYKYRRHLNGPKHKPGKKRRS 253
F + H R+ H P C E C + F V + RH H K+R++
Sbjct: 1293 AFKWPWARTEHMRV-HTGVRPYECQEPGCGQTFRFVSDFSRHKRKTGHSSDKRRKN 1347
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 37.5 bits (83), Expect = 0.014
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 134 REHGAV-LQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLR 186
R+HG C KC F+ + D+ H + +++ C CG FK + +KDH R
Sbjct: 350 RKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCL-CGSEFKHKRSLKDHAR 402
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 37.5 bits (83), Expect = 0.014
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 134 REHGAV-LQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLR 186
R+HG C KC F+ + D+ H + +++ C CG FK + +KDH R
Sbjct: 345 RKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCL-CGSEFKHKRSLKDHAR 397
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 37.5 bits (83), Expect = 0.014
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 11/132 (8%)
Query: 112 DVYECQYCRQICQGDSSKGRHVREHGAVLQCLKCDAKFSERRDFYAHHRRLHEIFVCHH- 170
D Y C+ C Q Q D + H R H + LK +A + R+ + E HH
Sbjct: 63 DRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKREAGEAARKRVFV----CPEPTCLHHD 118
Query: 171 CGVSFKMRYCIKDHLRRRHAPKK---CTCCNKTFARYKSLWMHTRLSHASAVPAYCVECD 227
+ IK H RR+H+ + C+ C+K +A + H + + +C
Sbjct: 119 PSHALGDLVGIKKHFRRKHSGHRQWACSRCSKAYAVHSDYKAHLK---TCGTRGHTCDCG 175
Query: 228 KHFTDVYKYRRH 239
+ F+ V + H
Sbjct: 176 RVFSRVESFIEH 187
>01_06_1495 + 37769982-37771496
Length = 504
Score = 37.5 bits (83), Expect = 0.014
Identities = 37/146 (25%), Positives = 56/146 (38%), Gaps = 12/146 (8%)
Query: 87 SYICDICESNFPDKLRLKMHIASHFDVYECQYCRQICQGDSS-KGRHVREHGA-VLQCL- 143
++ C IC F L+MH+ H D Y+ DSS + V + + C
Sbjct: 263 THFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAPVTRYSCPYVGCKR 322
Query: 144 -KCDAKFSERRDFYA---HHRRLH--EIFVCHHCGV-SFKMRYCIKDHLRRRHAPKKCTC 196
K KF + H++R H + + C C F + +K H + K
Sbjct: 323 NKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCS 382
Query: 197 CNKTFARYKSLWMHTRL--SHASAVP 220
C TF+R L+ H L H A+P
Sbjct: 383 CGTTFSRKDKLFGHVALFQGHTPALP 408
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 37.1 bits (82), Expect = 0.018
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 11/132 (8%)
Query: 112 DVYECQYCRQICQGDSSKGRHVREHGAVLQCLKCDAKFSERRDFYAHHRRLHEIFVCHH- 170
D Y C+ C Q Q D + H R H + LK +A + R+ + E HH
Sbjct: 64 DRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKREAGEAARKRVFV----CPEPTCLHHD 119
Query: 171 CGVSFKMRYCIKDHLRRRHAPKK---CTCCNKTFARYKSLWMHTRLSHASAVPAYCVECD 227
+ IK H RR+H+ + C C+K +A + H + + +C
Sbjct: 120 PSHALGDLVGIKKHFRRKHSGHRQWACARCSKAYAVHSDYKAHLK---TCGTRGHSCDCG 176
Query: 228 KHFTDVYKYRRH 239
+ F+ V + H
Sbjct: 177 RVFSRVESFIEH 188
>07_03_1548 +
27630988-27631049,27631632-27631767,27631904-27632041,
27632168-27632267,27632443-27632552
Length = 181
Score = 37.1 bits (82), Expect = 0.018
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 168 CHHCGVSFKMRYCIKDHLRRRHAPKKCTCCNKTFARYKSLW-MHTRLSHASAVPAYCVEC 226
C HCG + + +H HAP C+ C KT R LW +H L + A C C
Sbjct: 44 CEHCGYMVPKKL-MDEHYDENHAPMICSLCQKTVQR--ELWDLHKGLQCPQRMLA-CQYC 99
Query: 227 DKHF--TDVYKYR 237
D D+Y+++
Sbjct: 100 DFELPAADIYEHQ 112
>08_02_1602 - 28148255-28149413,28151927-28152087
Length = 439
Score = 36.3 bits (80), Expect = 0.031
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 85 RLSYICDICESNFPDKLRLKMHIASHFDVYECQYC-----RQICQ-GDSSKGRHVREHGA 138
+ ++ C +C F L+MH+ +H D Y+ + + + + GD + R++
Sbjct: 255 KYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSKAALSNPTKLLAKGGDETMAAAARKYSC 314
Query: 139 VLQCLKCD---AKFSERRDFYA---HHRRLH--EIFVCHHCG-VSFKMRYCIKDHLRRRH 189
+ + + AKF + H++R H +++VC+ CG F + ++ H +
Sbjct: 315 PQEGCRWNRRHAKFQPLKSVICAKNHYKRSHCPKMYVCNRCGRKHFSVLSDLRTHEKHCG 374
Query: 190 APKKCTCCNKTFARYKSLWMHTRL--SHASAVP 220
+ C +F+R L H L H +P
Sbjct: 375 DHRWLCSCGTSFSRKDKLIGHVSLFAGHQPVMP 407
>03_06_0607 + 35037467-35038624
Length = 385
Score = 36.3 bits (80), Expect = 0.031
Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 16/128 (12%)
Query: 88 YICDICESNFPDKLRLKMHIASHFDVYECQYCRQICQGDSSKGRHVREHGAVLQCLKCDA 147
+ C +C F L+MH+ H + Y+ G S+ + A + C
Sbjct: 164 HFCGVCGKGFKRDANLRMHMRGHGEEYKSAAALAKPGGSPSRSPAAADAAARRRFYSCP- 222
Query: 148 KFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLRRRHAPKKCTC--CN-KTFARY 204
Y +R E H K C+K+H RR H K TC CN K F+
Sbjct: 223 --------YVGCKRNRE----HKSFQPLKTPTCVKNHYRRSHCDKSFTCRRCNVKRFSVV 270
Query: 205 KSLWMHTR 212
L H +
Sbjct: 271 ADLRTHEK 278
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 36.3 bits (80), Expect = 0.031
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 134 REHGAV-LQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLR 186
R+HGA +C +C F+ + D+ H + + + C CG FK + + DH+R
Sbjct: 283 RKHGAKPFRCRRCAKPFAVKGDWRTHEKNCGKRWFCA-CGSDFKHKRSLNDHVR 335
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 172 GVSFKMRYCIKDHLRRRHAPKKCTC--CNKTFARYKSLWMH 210
GV+ RY I + P + C CNKTF RY ++ MH
Sbjct: 184 GVAMSSRYWIPTPAQILVGPVQFICHVCNKTFNRYNNMQMH 224
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 35.5 bits (78), Expect = 0.055
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 134 REHGAV-LQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLR 186
R+HGA C +C F+ + D+ H + + + C CG FK + + DH+R
Sbjct: 291 RKHGAKPFACRRCAKPFAVKGDWRTHEKNCGKRWFCA-CGSDFKHKRSLNDHVR 343
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 35.1 bits (77), Expect = 0.072
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 12/117 (10%)
Query: 88 YICDI--CESNFPDKLRLKMHIASHFDV--YECQY--CRQICQG--DSSKGRHVREHGA- 138
Y+C C+ F D +LK H H + C + C ++ D + H++ H
Sbjct: 72 YVCHYAGCDKKFLDSSKLKRHFLIHTGEKNFVCPHEGCGKVLAFSLDFNLKAHMKTHSVD 131
Query: 139 ---VLQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLRRRHAPK 192
V + +C +F++ AH ++ HE + G S R + DH H PK
Sbjct: 132 NYHVCKYPECARRFTQESKLRAHIKQQHEKGGLQNPGGSATNRSGLADHSHNSHTPK 188
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 197 CNKTFARYKSLWMHTRLSHASAVPAYCVECDKHFTDVYKYRRH 239
C KTF +L H + + CDK F D K +RH
Sbjct: 50 CGKTFVDAGALRKHAHVHGERQYVCHYAGCDKKFLDSSKLKRH 92
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 34.7 bits (76), Expect = 0.095
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 140 LQCLKCDAKFSERRDFYAHHRRLHE-----IFVCHHCGV---SFKMRYCIKDHLRRRHAP 191
L+C C +FS+ + H +H+ +F + C V SF R ++ H++ +H
Sbjct: 463 LKCKICSQEFSDDQGLGLHWTEVHKKEVRWLFRGYSCAVCMDSFTNRRVLERHVQEKHGA 522
Query: 192 K--------KCTCCNKTFARYKSLWMHTRLSHA 216
+ +C CN F LW H H+
Sbjct: 523 QYLQYSTLLRCISCNSNFLNTDLLWQHIVSDHS 555
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 90 CDICESNFPDKLRLKMHIAS-H-------FDVYECQYCRQICQGDSSKGRHVRE-HGA-- 138
C IC F D L +H H F Y C C RHV+E HGA
Sbjct: 465 CKICSQEFSDDQGLGLHWTEVHKKEVRWLFRGYSCAVCMDSFTNRRVLERHVQEKHGAQY 524
Query: 139 -----VLQCLKCDAKF 149
+L+C+ C++ F
Sbjct: 525 LQYSTLLRCISCNSNF 540
>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
Length = 486
Score = 34.3 bits (75), Expect = 0.13
Identities = 42/160 (26%), Positives = 59/160 (36%), Gaps = 28/160 (17%)
Query: 85 RLSYICDICESNFPDKLRLKMHIASHFDVYECQYCRQICQGDSSKGRHVREHGAVLQC-L 143
R ++ C +C F L+MH+ +H D Y+ +S G +R A +C
Sbjct: 319 RYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTAAAL------TSTGAGMR--AAARRCSY 370
Query: 144 KCDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLRRRHAPKKCTC--C-NKT 200
C A+ R H F + K C K+H RR H PK C C K
Sbjct: 371 SCPAEG-------CRWNRRHPRFQ------ALKSVVCAKNHYRRSHCPKMYVCGRCGGKQ 417
Query: 201 FARYKSLWMHTRLSHASAVPAYCVECDKHFTDVYKYRRHL 240
FA L H + H + C C F+ K H+
Sbjct: 418 FAVLSDLRTHEK--HCGELRWLC-SCGTFFSRKDKLMGHV 454
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 33.5 bits (73), Expect = 0.22
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 134 REHGAV-LQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLR 186
R+H A C KC + R D+ H + + C CG FK + +KDH+R
Sbjct: 232 RKHCAKPFACRKCGKPLAVRGDWRTHEKNCGRRWHCA-CGSDFKHKRSLKDHIR 284
>01_06_1284 + 35994595-35995074
Length = 159
Score = 33.5 bits (73), Expect = 0.22
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 113 VYECQYCRQICQGDSSKGRHVREHGAVLQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCG 172
V+EC+ C + + G H H + L D + R+HE C CG
Sbjct: 34 VFECKTCSKRFPSFQALGGHRTSHTRLQAKLLSDPAAAAAAAAERDRARVHE---CAVCG 90
Query: 173 VSFKMRYCIKDHLRR 187
V F M + H+RR
Sbjct: 91 VEFSMGQALGGHMRR 105
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 33.1 bits (72), Expect = 0.29
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 137 GAVLQCLKCDAKFSERRDFYAH---HRRLHEIFVCHHCGVSFKMRYCIKDHLRRRHAPKK 193
G L CL C A+F ++H R V G+ F + + +R + A K
Sbjct: 52 GGGLLCLFCSARFDSESSLFSHCASEHRFDFYRVVKETGMDFYGCIKLINFVRSKVAENK 111
Query: 194 CTCCNKTFARYKSLWMHTRLSHASAVP 220
C C + F+ L H HA +P
Sbjct: 112 CWSCGQVFSSNSELCGHL---HALEIP 135
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 32.3 bits (70), Expect = 0.51
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 132 HVR-EHGAVLQCLK-CDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLRRRH 189
HV+ ++ V+ C C F+ AH++ H VC CG +++ K H R
Sbjct: 377 HVKLDYSEVICCEPGCMKAFTNLECLKAHNKSCHRHVVCDVCGTK-QLKKNFKRHQRMHE 435
Query: 190 ---APKKCTC----CNKTFARYKSLWMHTRLSHASAVPAYC--VECDKHFTDVYKYRR 238
++ C C +F++ +L H + H P C C K F+ YK+ R
Sbjct: 436 GSCVTERVRCHLKDCKLSFSKKSNLDKHVKAVHEQKRPFVCGFSGCGKSFS--YKHVR 491
Score = 29.9 bits (64), Expect = 2.7
Identities = 46/218 (21%), Positives = 85/218 (38%), Gaps = 25/218 (11%)
Query: 88 YIC--DICESNFPDKLRLKMHIASH--FDVYECQYCRQICQGDSSKGRHVREHG-AVLQC 142
+IC + C F +L+ H SH D E C C + ++ H + +
Sbjct: 353 FICPEENCGKTFKYASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKAHNKSCHRH 412
Query: 143 LKCDAKFSER-RDFYAHHRRLHEIFV------CH--HCGVSFKMRYCIKDHLRRRHAPKK 193
+ CD +++ + + H+R+HE CH C +SF + + H++ H K+
Sbjct: 413 VVCDVCGTKQLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHVKAVHEQKR 472
Query: 194 CTCCNKTFARYKSLWMHTRLSHASAVPAYCVECDKHFTDVYKYRRHLNGPKHKPGKKRRS 253
C + + H R +H + V+ +F ++ R P+ G+KR++
Sbjct: 473 PFVCGFSGCGKSFSYKHVRDNHEKSSAHVYVQA--NFEEIDGER-----PRQAGGRKRKA 525
Query: 254 WSIGIYCFTEMGRSVVPLAETIPPVNRGNNYSELLKEG 291
I + M + V + P + G Y L G
Sbjct: 526 ----IPVESLMRKRVAAPDDDAPACDDGTEYLRWLLSG 559
>07_03_1491 + 26953193-26954326
Length = 377
Score = 31.5 bits (68), Expect = 0.89
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 205 KSLWMHTRLSHASAVPAYC-VECDKHFTDVYKYRRHLNGPKHKPGKKR 251
+ LW H A P YC K+FTD + L+G + G++R
Sbjct: 204 RKLWSVDLAGHVVAAPEYCHANFTKYFTDAFWSDGELSGAAFRRGRRR 251
>11_08_0054 - 28091294-28092208
Length = 304
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 61 MLKRIDDFYNRVQRAIGLLLSGTKRLSYICDICESNFPDKLRLKMHIASHFDVYECQY 118
+ RI+D+ ++ IG++L+ T R SY ++ KL ++H+ +D C Y
Sbjct: 165 LANRINDYNQNIRDPIGIMLTATVRCSYPDPRMKAALDTKLFRRIHV-RFYDDPSCSY 221
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 31.1 bits (67), Expect = 1.2
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 114 YECQYCRQICQGDSSKGRHVREHGAVLQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGV 173
Y C+ C + Q D + H R H + LK + ++ Y EI HH
Sbjct: 66 YICEVCHKGFQRDQNLQLHRRGHNLPWK-LKQRSSTEAKKKVYV----CPEITCPHHDAT 120
Query: 174 -SFKMRYCIKDHLRRRHAPKKCTC--CNKTFARYKSLWMHTRL 213
+ IK H R+H KK C C+K +A HT++
Sbjct: 121 RALGDLTGIKKHYSRKHGEKKWKCDRCSKKYAVQSDWKAHTKI 163
>11_08_0055 - 28095996-28096934
Length = 312
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 61 MLKRIDDFYNRVQRAIGLLLSGTKRLSYICDICESNFPDKLRLKMHIASHFDVYECQY 118
+ RI+D+ + IG++L+ T R SY + KL ++H+ +D C Y
Sbjct: 173 LANRINDYNQNIHDPIGIMLTATVRCSYPDPRMKKALDTKLFTQIHV-RFYDDPRCSY 229
>06_03_1478 - 30420097-30420651
Length = 184
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 79 LLSGTKRLSYICDICESNFPDKLRLKMHIASHFDVYECQY 118
L + KR Y+CD C++ F + L H ASH C +
Sbjct: 99 LAADGKRYRYVCDRCKAPFETRQALGGHRASHSTKKGCSW 138
>03_06_0477 + 34210844-34211356
Length = 170
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 159 HRRLHEIFVCHHCGVSFKMRYCIKDHLRR 187
HR HE CH CG+ F+M + H+RR
Sbjct: 105 HRDKHE---CHICGLGFEMGQALGGHMRR 130
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 83 TKRLSYICDICESNFPDKLRLKMHIASHFDVYECQYCRQICQGDSSKGRHVREH 136
T + Y CD C + + R +I FD+ C+ C +I D H R+H
Sbjct: 2602 TSSVQYCCDGCSTVPILRRRWHCNICPDFDL--CETCYEILDADRLPAPHSRDH 2653
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 181 IKDHLRRRHAPKKCTC--CNKTFARYKSLWMHTRLSHASAVPAYCVECDKHFT 231
IK H R+H K+ TC C K +A L HT+ Y +C FT
Sbjct: 124 IKKHFCRKHGEKRWTCQRCGKRYAVQADLKAHTK---TCGTREYRCDCGTLFT 173
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 29.9 bits (64), Expect = 2.7
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 114 YECQYCRQICQGDSSKGRHVREHGAVLQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGV 173
Y C+ C + Q D + H R H + + + K R+ Y E HH
Sbjct: 74 YVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRNPKEVVRKKVYV----CPEAGCVHHDPA 129
Query: 174 -SFKMRYCIKDHLRRRHAPKKCTC--CNKTFARYKSLWMHTRL 213
+ IK H R+H KK C C+K +A + H+++
Sbjct: 130 RALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVHSDWKAHSKV 172
>07_03_1165 - 24459156-24460139
Length = 327
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 187 RRHAPKKCTCCNKTFARYKSLWMHTRLSHA 216
RR A C CNK F K++ H R+ HA
Sbjct: 108 RREASFPCHLCNKEFGSRKAVHGHMRVHHA 137
>05_05_0115 - 22493350-22493874
Length = 174
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 131 RHVREHGAVLQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLRR 187
R +EHGA + A ++RR AH L C CGV F+M + H+RR
Sbjct: 61 RQRQEHGAAGAAV-VGATNNQRRVVSAHQWHL-----CAVCGVEFRMGQALGGHMRR 111
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 130 GRHVREHGAVLQCLKCDAKFSERRDFYAHHRRLHEIFVCHHCGVSFKMRYCIKDHLRRRH 189
G H G + C +C A E + R E+ C CG F ++ H RH
Sbjct: 208 GHHASLRG-LSGCYECRAINVEPMS--RRYPRPRELCACSQCGEVFNKADSLEHHQAIRH 264
Query: 190 APKKCTCCNKTFARYKSLWMHTRLSHASAVP 220
A K K RY L + L+ ASA P
Sbjct: 265 AVK--IGWQKYIKRYLCLAIFCMLAVASASP 293
>12_02_0916 - 24271151-24271894
Length = 247
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 193 KCTCCNKTFARYKSLWMHTRLSHASAVPAYCVECDK 228
+C+ C K FA Y++L H + SH P V+ D+
Sbjct: 92 RCSVCGKAFASYQALGGH-KASHRKPPPPAMVDDDE 126
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 114 YECQYCRQICQGDSSKGRHVREHGAVLQCLKCDAKFSERRDFYAHHRRLHEIFVCHHC-G 172
+ C+ C + Q D + H R H + + +K + R+ Y E HH
Sbjct: 6 FVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRGSKEAVRKKVYI----CPEASCVHHDPS 61
Query: 173 VSFKMRYCIKDHLRRRHAPKKCTC--CNKTFARYKSLWMHTRL 213
+ IK H R+H KK C C+K +A + H+++
Sbjct: 62 RALGDLTGIKKHFFRKHGEKKWKCDKCSKKYAVHSDWKAHSKI 104
>11_06_0176 +
20929629-20929791,20929918-20930333,20930449-20930736,
20931034-20931147,20931245-20931352,20931701-20931744,
20933106-20933200,20934103-20934182,20934278-20934391,
20934476-20934628,20934740-20934832
Length = 555
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 171 CGVSFKMRYCIKDHLRRRHAPKKCTCCNKTFARYKSLWMHTRLSH 215
C + F RY ++A KC CN F + L H R H
Sbjct: 508 CVICFFERYSTIAMASGKNAGTKCNLCNARFLKDSDLEFHRRYYH 552
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.139 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,723,773
Number of Sequences: 37544
Number of extensions: 414411
Number of successful extensions: 1346
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1274
Number of HSP's gapped (non-prelim): 84
length of query: 309
length of database: 14,793,348
effective HSP length: 82
effective length of query: 227
effective length of database: 11,714,740
effective search space: 2659245980
effective search space used: 2659245980
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)
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