GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001662-TA|BGIBMGA001662-PA|undefined
         (257 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q84EX0 Cluster: Putative resolvase; n=1; Lactobacillus ...    35   2.3  
UniRef50_Q6C2I5 Cluster: Similar to DEHA0F13101g debaryomyces ha...    34   4.1  
UniRef50_Q4P3J7 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q8KEN4 Cluster: Transcription-repair coupling factor; n...    33   5.4  
UniRef50_Q2CGW0 Cluster: Sugar ABC transporter ATP-binding prote...    33   7.1  
UniRef50_Q8SUE9 Cluster: Probable kinetochore protein NDC80; n=1...    33   9.4  

>UniRef50_Q84EX0 Cluster: Putative resolvase; n=1; Lactobacillus
           fermentum|Rep: Putative resolvase - Lactobacillus
           fermentum
          Length = 192

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 13/35 (37%), Positives = 25/35 (71%)

Query: 82  SEKQNRGYAFPVENVVKRACAATGLSESTIKRIKR 116
           +++  + Y + +E+ ++    ATG+SEST+KRI+R
Sbjct: 151 TDRYRKIYDYSLEHSIRETALATGVSESTVKRIRR 185


>UniRef50_Q6C2I5 Cluster: Similar to DEHA0F13101g debaryomyces
           hansenii and tr|O93997 Candida albicans; n=1; Yarrowia
           lipolytica|Rep: Similar to DEHA0F13101g debaryomyces
           hansenii and tr|O93997 Candida albicans - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 446

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 112 KRIKRDGLRAEATQTRMTGPKKRRVRKTKVQLDYFQL 148
           + +K +G  AEA +T  T PKKRR +K KV+ D   L
Sbjct: 383 RTVKEEGEEAEAEETTQTKPKKRR-KKVKVEEDLLPL 418


>UniRef50_Q4P3J7 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 246

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 82  SEKQNRGYAFPVEN--VVKRACAATGLSESTIKRIKRDGLRAEATQTRMTGPKKRRVRKT 139
           S ++ R   + + N   ++      GLS ST +RI +  L A A +++   PKK + R  
Sbjct: 5   SPEKRRKVLYHLRNGKTIRSVAQIAGLSNSTAQRISKSALVA-ALKSKGGRPKKLQPRHL 63

Query: 140 KVQLDYFQLCALRSIVNGYSMRKEVPTLGKILAAAKHELNYC 181
           +    YF+L    ++  G    KE   +       +  L +C
Sbjct: 64  RFLDHYFELNCTATVKEGCRAFKETFDINVCPTTVRKALQFC 105


>UniRef50_Q8KEN4 Cluster: Transcription-repair coupling factor;
           n=10; Chlorobiaceae|Rep: Transcription-repair coupling
           factor - Chlorobium tepidum
          Length = 1113

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 15/55 (27%), Positives = 31/55 (56%)

Query: 61  KKEAIDGQARELIYKVIKFFESEKQNRGYAFPVENVVKRACAATGLSESTIKRIK 115
           KKE +  + R++  K+I+ +   K   G+AF  +++ +R   A+ + E T  ++K
Sbjct: 500 KKERVRKKLRDIAAKLIRVYAKRKMTPGFAFGPDSIFQREFEASFMFEETPDQLK 554


>UniRef50_Q2CGW0 Cluster: Sugar ABC transporter ATP-binding protein;
           n=1; Oceanicola granulosus HTCC2516|Rep: Sugar ABC
           transporter ATP-binding protein - Oceanicola granulosus
           HTCC2516
          Length = 853

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 116 RDGLRAEATQTRMTGPKKRRVRKTKVQLDYFQLCALRSIVNGYSMRKEV----PTLGKIL 171
           R GL A+A   R    ++  V   +VQ+  + L AL + V G+ +  EV    PT+G   
Sbjct: 699 RSGLEAKAVGFREEAARRNGVAVDRVQIRAYVLAALTATVAGFFLASEVGVGHPTIGANF 758

Query: 172 AAAKHELNYCGG 183
           A A       GG
Sbjct: 759 ALASIAAAVLGG 770


>UniRef50_Q8SUE9 Cluster: Probable kinetochore protein NDC80; n=1;
           Encephalitozoon cuniculi|Rep: Probable kinetochore
           protein NDC80 - Encephalitozoon cuniculi
          Length = 543

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 62  KEAIDGQARELIYKVIKFFESEKQNRGYAFPVENVVKRACAATGLSESTIK--RIKRDGL 119
           +E +D + REL   +     SEKQ  G        + R        E  I+  R + DGL
Sbjct: 233 REELDRKKRELTDDLNMLIASEKQLEGKKRKYLGAISRLSEEIVKVEEEIESLRAQEDGL 292

Query: 120 RAEATQTRMTGPKKRRVRKTKVQL 143
           RA+ T+ R+     + +   K++L
Sbjct: 293 RAQITKQRINPEDVKEMNAEKIEL 316


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,038,478
Number of Sequences: 1657284
Number of extensions: 5188701
Number of successful extensions: 11922
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11920
Number of HSP's gapped (non-prelim): 6
length of query: 257
length of database: 575,637,011
effective HSP length: 99
effective length of query: 158
effective length of database: 411,565,895
effective search space: 65027411410
effective search space used: 65027411410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 71 (32.7 bits)