GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001662-TA|BGIBMGA001662-PA|undefined
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    28   1.2  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.2  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 80  FESEKQNRGYAFPVENVVKRACAATGLSESTIKRIKRDGLRAEATQTRMTGPKKRRVR 137
           FE E   +    P+E   K    AT   +   KR+K +   AE +QT    P +R  R
Sbjct: 169 FEPENTRKKLQKPIEKPKKEKIEATPKIDGG-KRLKNEKSSAEISQTSKQRPSRRSAR 225


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 72  LIYKVIKFF--ESEKQNRGYAFPVENVVKRACAATG-LSESTIKRI 114
           LI KV  +   ESEK    Y   ++NV+K+  +  G ++ S ++R+
Sbjct: 468 LIQKVYSYITAESEKVGNRYGETLDNVIKQHLSRIGSVASSAVQRL 513


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,899
Number of Sequences: 5004
Number of extensions: 21829
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 2
length of query: 257
length of database: 2,362,478
effective HSP length: 71
effective length of query: 186
effective length of database: 2,007,194
effective search space: 373338084
effective search space used: 373338084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)