GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001662-TA|BGIBMGA001662-PA|undefined
         (257 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0683 - 35522534-35522647,35523009-35523143,35523224-355233...    30   2.1  
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439...    28   6.4  

>03_06_0683 -
           35522534-35522647,35523009-35523143,35523224-35523346,
           35523640-35523741,35523884-35524090,35524634-35524748,
           35524839-35525048,35525135-35525234,35525448-35525609,
           35525737-35526073,35526472-35526678,35527284-35527736
          Length = 754

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 77  IKFFESEKQNRGYAFPVENVVKRACAATGLSESTIKRIKRDGL 119
           +KF+ S  QN  +   +EN+ KRA  AT L + +++R   DGL
Sbjct: 212 LKFYISHAQNLPF---IENMEKRAQGATKLLDGSLERCFVDGL 251


>01_06_1723 -
           39443176-39443505,39443615-39443710,39443834-39443902,
           39444381-39444443,39444521-39444598,39444725-39444838,
           39445727-39445804,39446457-39446522,39446739-39446804,
           39446896-39447003,39447355-39447432,39447951-39448010,
           39448087-39448191,39448407-39448595,39448922-39448985,
           39449244-39449385,39449494-39449654,39449952-39450076,
           39450230-39450300,39450410-39450560,39450713-39450769,
           39451049-39451143,39451331-39451379
          Length = 804

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 59  KKKKEAIDGQARELIYKVIKFFESEKQNRGYAFPVENVVKRACAATGLSESTIKRIKRDG 118
           K++  A     +EL++K+ +     +Q+      +   +K+   A     +TI  + R  
Sbjct: 56  KEELAAATNAVQELMHKIHEIKTKAEQSESMVQEICRDIKKLDCAKRHITTTITALHRLT 115

Query: 119 LRAEATQTRMTGPKKRRVRKTKVQLDYF-QLC----ALRSIVNGYSMRKEVPTLGKILAA 173
           +   A +       KR+ ++   QL+   QLC    A R +     +R++   + KIL +
Sbjct: 116 MLVSAVEQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDVPKITELREKFKNIKKILKS 175

Query: 174 -AKHELNYCG-GKESLRLILLNKL 195
               +    G GKE+    LL +L
Sbjct: 176 HVFSDFTSLGTGKETEDATLLQQL 199


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,855,059
Number of Sequences: 37544
Number of extensions: 135457
Number of successful extensions: 269
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 2
length of query: 257
length of database: 14,793,348
effective HSP length: 81
effective length of query: 176
effective length of database: 11,752,284
effective search space: 2068401984
effective search space used: 2068401984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)