GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001662-TA|BGIBMGA001662-PA|undefined
         (257 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               29   5.0  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_28488| Best HMM Match : PAX (HMM E-Value=0)                         28   6.6  

>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/76 (22%), Positives = 31/76 (40%)

Query: 105 GLSESTIKRIKRDGLRAEATQTRMTGPKKRRVRKTKVQLDYFQLCALRSIVNGYSMRKEV 164
           GL E     ++ D  + E + T    PKK +  K +  +     C +  I + +S  + +
Sbjct: 109 GLQEKEGMIVEDDSDKKEDSFTEFDSPKKEKSGKNRKGMITKSTCTISHITDSFSTDRIL 168

Query: 165 PTLGKILAAAKHELNY 180
           P   K   +  H+  Y
Sbjct: 169 PCRKKTFNSKSHKCCY 184


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/76 (22%), Positives = 31/76 (40%)

Query: 105 GLSESTIKRIKRDGLRAEATQTRMTGPKKRRVRKTKVQLDYFQLCALRSIVNGYSMRKEV 164
           GL E     ++ D  + E + T    PKK +  K +  +     C +  I + +S  + +
Sbjct: 109 GLQEKEGMIVEDDSDKKEDSFTEFDSPKKEKSGKNRKGMITKSTCTISHITDSFSTDRIL 168

Query: 165 PTLGKILAAAKHELNY 180
           P   K   +  H+  Y
Sbjct: 169 PCRKKTFNSKSHKCCY 184


>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
          Length = 551

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 59  KKKKEAIDGQARELIYKVIKFFE-SEKQNRGYAFPVENVVKRACAATGLSESTIKRIKRD 117
           K++K+  D + +E   KV K      + N   ++ + +++K+  A    S   +K IK +
Sbjct: 172 KERKDEEDDKGKE-DEKVEKNSSLPSRHNFSSSYSIASILKKPSAEEDGSAEIVKGIKVE 230

Query: 118 GLRAEATQTRMTGPKKRRVRKTKVQLDYFQLCALRSIVNGYSMRKEVPTLGKI 170
           GL  E++ +  T  K +R R+   Q     L     +++      ++P  GKI
Sbjct: 231 GLVFESSSS-ATQEKDKRRRQRLDQQAQILLPTGHVLMSSNGCTNQIPGQGKI 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,657,873
Number of Sequences: 59808
Number of extensions: 159716
Number of successful extensions: 345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 3
length of query: 257
length of database: 16,821,457
effective HSP length: 81
effective length of query: 176
effective length of database: 11,977,009
effective search space: 2107953584
effective search space used: 2107953584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)