GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001662-TA|BGIBMGA001662-PA|undefined
         (257 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AC024805-3|AAK39338.1|  801|Caenorhabditis elegans Hypothetical ...    28   5.7  
AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    27   10.0 

>U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical
           protein K02A6.3a protein.
          Length = 483

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 157 GYSMRKEVPTLGKILAAAKHELNYCGGKESLRLI 190
           G+   K+V T G+IL + K  LNY  G +SL L+
Sbjct: 147 GFIAGKDVGTGGQILHSLKTVLNYLHGLKSLSLV 180


>AC024805-3|AAK39338.1|  801|Caenorhabditis elegans Hypothetical
           protein Y51H7C.6a protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 2/34 (5%)

Query: 141 VQLD--YFQLCALRSIVNGYSMRKEVPTLGKILA 172
           +QLD  Y Q+CA  + V G+S R++V  LG+I++
Sbjct: 715 LQLDREYRQICAYLTNVAGWSAREKVGRLGQIVS 748


>AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical
           protein Y34B4A.8 protein.
          Length = 604

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 134 RRVRKTKVQLDYFQLCALRSIVNGY 158
           + +R+  V LDYFQ   L  ++N Y
Sbjct: 75  QNLREASVDLDYFQTSCLHRVINAY 99


>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 121 AEATQTRMTGPKKRRVRKTKVQLDYFQLCALRSIVNGY 158
           AE    ++   KK ++ +T    D  ++C + ++ NGY
Sbjct: 470 AEIAYKKVVAEKKMKILRTCDMFDAVEICMMLAVFNGY 507


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,246,943
Number of Sequences: 27539
Number of extensions: 122322
Number of successful extensions: 271
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 4
length of query: 257
length of database: 12,573,161
effective HSP length: 80
effective length of query: 177
effective length of database: 10,370,041
effective search space: 1835497257
effective search space used: 1835497257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)