GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001662-TA|BGIBMGA001662-PA|undefined
         (257 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.6  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 80  FESEKQNRGYAFPVENVVKRACAATGLSESTIKRIKRDGL 119
           +   K+N  YA  ++ V ++    TGL ++ I+ +K D L
Sbjct: 332 YAQHKENELYANLMKIVHEKQQEITGLIQNIIQEMKNDVL 371


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 80  FESEKQNRGYAFPVENVVKRACAATGLSESTIKRIKRDGL 119
           +   K+N  YA  ++ V ++    TGL ++ I+ +K D L
Sbjct: 370 YAQHKENELYANLMKIVHEKQQEITGLIQNIIQEMKNDVL 409


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 58  GKKKKEAIDGQARELIYKVIKFFESEKQNRGYAFPVENVVKRA 100
           GK+    I G     +  +  +   + +NRG  FPV  V KR+
Sbjct: 264 GKRDAAGIYGSNSSTVGTIFGY--QDMRNRGNNFPVYQVEKRS 304


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,402
Number of Sequences: 429
Number of extensions: 1276
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 257
length of database: 140,377
effective HSP length: 56
effective length of query: 201
effective length of database: 116,353
effective search space: 23386953
effective search space used: 23386953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)