GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001662-TA|BGIBMGA001662-PA|undefined
         (257 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05...    29   2.3  
At1g19460.1 68414.m02424 kelch repeat-containing F-box family pr...    29   3.1  
At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containi...    28   5.4  
At1g19470.1 68414.m02425 kelch repeat-containing F-box family pr...    27   9.4  

>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1131

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 98  KRACAATGLSESTIKRIKRDG-----LRAEATQTRMTGPKKR-RVRKTKVQLDYFQLCAL 151
           KRACA    S+S ++R+ R+      +RA   Q R+   KKR  + + + +    ++  +
Sbjct: 164 KRACAKERTSQSMMRRMARESKYKERVRASINQKRVAAEKKRLGLLEAEKKKARARVQQV 223

Query: 152 RSIVNGYSMRKEV 164
           R + N  S ++E+
Sbjct: 224 RHVANSVSNQREI 236


>At1g19460.1 68414.m02424 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 416

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 81  ESEKQNRGYAFPVENVVKRACAA 103
           E EK NR  +FP+ N +  AC A
Sbjct: 46  EEEKDNRSVSFPIPNELTEACVA 68


>At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 700

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 95  NVVKRACAATGLSEST---IKRIKRDGLRAEATQTRMTGPKK 133
           N V  ACA  G+S+      +R+ RDG+R  AT+T   G  K
Sbjct: 131 NAVITACAQNGVSDEVFRMFRRMNRDGVR--ATETSFAGVLK 170


>At1g19470.1 68414.m02425 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 412

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 81  ESEKQNRGYAFPVENVVKRACAA 103
           E E+ NR  +FP+ N +  AC A
Sbjct: 46  EEEEDNRSVSFPIPNELTEACVA 68


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,016,581
Number of Sequences: 28952
Number of extensions: 116618
Number of successful extensions: 278
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 4
length of query: 257
length of database: 12,070,560
effective HSP length: 80
effective length of query: 177
effective length of database: 9,754,400
effective search space: 1726528800
effective search space used: 1726528800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)